Zingiber officinale (ginger): 121992675
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Entry
121992675 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121992675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121992675
03009 Ribosome biogenesis [BR:
zof03009
]
121992675
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121992675
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
121992675
Complex B
121992675
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
121992675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
121992675
NCBI-ProteinID:
XP_042403119
LinkDB
All DBs
Position
6B:72181789..72189323
Genome browser
AA seq
1140 aa
AA seq
DB search
MAGGSTSSRPRYAPDDPTLPKPWRALVDGSTGYLYYWNPETNVTQYERPSDELPPPPPLL
PPPPPLLPPKSASVIAVSRHHPDDRRHRHDDDDRHDRSRIHQDGNGRSRNGHSTKEKREG
KISTGGQGSSVNVGRASSIPVEAYRRQNEIIVTGEDVPAPFMTFESAGFPPEILEEVCRA
GFSAPTPIQAQSWPIALQSHDIVAIAKTGSGKTLGYLFPGFMHLKRLRNDCKLGPTMLIL
APTRELATQIQDEALKFGRSSRILSTCVYGGAPKGPQLRDLDRGVDIIVATPGRLNDILE
MKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPHRRQTLMFTATWPKEVRKIAADL
LVHPVQVNIGSSDELVANTSITQYVEVITPVEKQRRVEQILRNQDAGSKVLIFCTTKRMC
DQLSRTLARQFKAAAIHGDKSQAERDRVLSQFRTGRSPILVATDVAARGLDIKDIRVVIN
YDFPTGVEDYVHRIGRTGRAGATGVSYTFFCQQDSKYASDLVKILEGANQKVPKELKDMV
SRGGHGGRSRRWASRSDAKDNGRLVTGQSNLGGLLSLPSRSDSYLGSHGTNDREPLDRSR
GRVRSRSRSHSRDRKNNPSLKRARLASPPSRNRGSRSRSHSPKHVLDRYRGGTKELTRVS
SQLPRRIPSPTTRHASPPSRNQGRSRSRSRSHSPNRGYDRHSGRTREVVHVSSLPKRMPS
PTAKHVNPSSRNHDRSPSKSGSPNPNRGYDHYGGGTNEVARSSSPLPKKMSSPTARHASL
PSKSPHSIDHVFDCHDEENREATHGSSALPNLIPSSTTRHASPPGRNCGHSQSRSLSCSS
DHGFDRYSERTRDAAHGSSPLSNQMPSPTVMHASPPGRSFGCSPSRSRSHSPNHVYSPND
GYDAHGEGSKEVTLVSSSFPKRMPSPAAGRENPHRNHVCSRSRSPSRSPNHGSDCFHGSA
GQIASASPPLSRRGLSPIDCHASPPISNRGQSRSRSLSHSPGRGVVHYGQGSEQEPQVDL
PHPITVPALASHRTSDPNHSVMPYDNQRSQSSDGGNIAAVELNESHGQDERSRKPHGSDS
PCQWHKRSPLKNEDFNPQLSVPRPAQLPVLPLNSHVEEEEGMIPADEDSLIFQEDGRTSP
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggaagcacatcgagccggccgcggtacgctccggatgatccgactctgccc
aaaccttggcgggcgctggtggacggaagcaccggctacctttactattggaacccggaa
actaacgtcacccagtacgaacgcccgtccgatgagctccctcctcctcctccactcttg
cccccgcccccaccgctccttcctcccaaatccgcttctgtgatcgccgttagccgtcat
catccagatgatcgccgtcatcgtcacgacgatgacgatcgccatgatcgttcaaggatc
caccaggatggaaatggcagaagcaggaacggacatagcacaaaggaaaaaagagaaggg
aagatctcaactggaggccaaggatcatctgtcaatgttggaagggcttcttccatacct
gtagaagcttatcgtcgtcaaaatgaaataattgtgacgggagaagatgtgcctgcacca
ttcatgacatttgaatctgcaggtttcccacccgagattttggaagaggtatgccgtgct
ggtttttctgctccaactccaattcaggctcagtcatggccaattgcattacagagtcat
gatatagtggctattgcaaaaacaggatctggaaaaacattaggatatctttttcctggg
ttcatgcacctcaagcgccttcgaaacgactgtaaactaggtcctacaatgttaatattg
gcaccgacaagggaattggcaacacagatacaggacgaagctttaaaatttggcagatca
tcaagaattctaagcacgtgtgtgtatggaggagcacctaaagggccccagttgagggat
cttgatcgaggagtggacattattgttgcaactccaggaagattaaatgacattttggaa
atgaaaagagtgagtctccgtcaggtttcatatttagttcttgacgaggctgatagaatg
ctggatatgggttttgagccacaaattcgaaaaatcgtgaaagaagtaccccatcgtcgc
caaacacttatgttcactgctacttggcctaaagaagttcgaaaaattgctgcagattta
cttgttcatcctgttcaggtcaacattggcagttcagatgagcttgttgcaaacacttct
atcacacagtatgtagaagtaattactcctgtggagaaacaacgccgagtggagcaaata
ttgcgcaatcaagatgcaggctccaaggttctcatattttgcaccacaaagagaatgtgt
gaccagctgtctcgaacacttgcacgtcagttcaaagctgctgctattcatggtgataag
tctcaggccgagagggatagggttttaagccaatttcgcacgggtagatctcccatacta
gtagccacagatgttgctgctcgcggtctagacattaaggatatcagggtggtgataaac
tatgatttccccacaggagttgaagactatgttcacagaattggtagaactggtagggct
ggtgcaactggagtctcctacacctttttttgtcaacaggactccaaatatgcttcagat
cttgttaaaattctcgaaggtgctaatcagaaggttccaaaagagctaaaagacatggtt
tcacgtggtgggcatggtggcaggtcacggcgctgggcttcccgttcggatgccaaggat
aatggccgcttagttactgggcaaagcaatttgggtggtttgctatcacttccaagtaga
tcagattcttatcttggcagtcatggcaccaatgaccgcgagccacttgacagatctagg
ggccgggttcgtagccgcagccgcagtcatagccgtgatcggaagaacaatcccagctta
aagagggctcggcttgcaagccctcctagcaggaaccgtggtagcaggagtcgcagtcac
agtcctaaacatgtccttgatcggtaccgtgggggaacaaaggagttgacgcgtgtgagt
tcacaactcccaaggaggattccatcgccaactactaggcatgcaagccctcctagtagg
aaccaaggtcgcagtcgaagcaggtcgcgcagtcacagccctaaccgtggatatgatcgt
cacagtgggagaacaagggaggtggtacatgtaagttcacttccgaagagaatgccatca
ccaacagctaagcatgtaaatccttccagcaggaaccatgatcgcagtccaagcaagagc
ggcagtcccaatcctaaccgtggatatgatcattatggtggggggactaatgaggttgca
cgctcaagttcaccactcccaaagaagatgtcatctcccacagctagacatgcaagcctt
cctagcaagagcccccacagtattgaccatgtcttcgattgtcatgacgaggaaaatagg
gaggcgacacatgggagttcagcactgccaaatctgattccatcatcaactactaggcat
gcaagccctccaggtaggaactgtggtcacagtcaaagcaggagcctcagctgcagttca
gatcatggctttgatcgttatagtgagagaactagggatgcagcacatgggagttcacca
ctctcaaatcagatgccatcaccaaccgttatgcatgcaagccctccaggcaggagcttt
ggctgcagtccaagcaggagtcgcagtcacagtcctaaccacgtctacagtcctaatgat
ggctatgatgctcatggtgagggatctaaggaggtgacacttgtgagctcatcattccca
aagaggatgccatcaccagcagctgggcgtgaaaatcctcataggaaccatgtctgcagt
cgaagcagaagtcccagtcgcagtcctaaccatggctctgattgttttcatgggtcagct
gggcagattgctagtgcgagcccaccactctcaaggaggggcctgtcaccaatagattgc
catgcaagcccccctatcagcaaccgtggccaaagtcgaagcaggagccttagccacagt
cctggtcggggcgttgttcattatggtcagggaagtgaacaggaaccacaagtcgatttg
ccacacccaataacagtgccagcactagcatctcatcgcacgtctgacccaaaccattca
gtgatgccatacgacaaccaaagatcgcagtcaagtgatgggggaaacatagcagcggtg
gaactcaacgagtcacacggtcaggatgagagaagcagaaaaccacatggatcagatagc
ccatgtcagtggcacaaaaggtctccacttaaaaatgaagattttaatccacagctgtca
gttccaaggcctgcccagttgccagtgttgcctctcaacagccatgtagaggaggaagaa
ggcatgattcctgcagatgaggacagtttaatttttcaggaggatggtaggacttcacca
tag
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