Zingiber officinale (ginger): 121992740
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Entry
121992740 CDS
T08725
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121992740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121992740
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121992740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
121992740
NCBI-ProteinID:
XP_042403225
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Position
6B:75531757..75540128
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AA seq
646 aa
AA seq
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MPRKVNSGLDYDDGYDNYDDYDYDYDYDHEVKDDGYDEDNVASQLGKDAKKQGIWLCPIC
SYDNDETSFCCDICGAIQVYAPNYGKQKVNPASKDTRASAMSKSHAQISIATPKTNNLVD
VFQSKRPNLYEKVQPDYRSAESNGKGKEALILSSPDNASESESSYSRENKDTIAPLSSNL
NQLKLDKHPIYNRKTNTETQYQPEEWMLIDKGPGTLQQLNLAIVGHVDSGKSTLSGRLLH
LLGKVSKKEMHKYEKEAKEKGKGSFAYAWAMDESSAERERGVTMTVAVAYFDSKKYHVVL
LDSPGHKDLVPNMISGATQADAAVLVVDASTGSFEAGMDGYGIGQTREHAQLVRSFGVEQ
IIVAVNKMDVVGYSKERFNFIKSQLGAFLRSCGFKDSSIIWVPLSVVENQNLVTTTTDVR
LSSWYRGFCLLDAIDSLQTPLRDVSKPLILPICDAIKTSMGNFAACGKLETGAICNGSKV
LVMPLGELATIRSIERDSISYNSARAGDNVAVTLQGINSGHVLAGGVICHPDYPMQVAKH
LELKILVLDISTPILVGSQVEFHIHHAKEAGRVAKMVALLDQKTGKVSKAPRILKGKQSA
IIEVQLDGAVCVEEFSKSKALGRAFLRSSGTTIAVGIVTRILEHES
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagtcaattctgggcttgactatgatgatggatatgacaattatgatgat
tatgattatgattatgattacgatcatgaagtaaaagatgatggctacgacgaagataat
gtggcatctcagcttggtaaggatgccaagaagcaaggaatctggctttgtccaatttgc
tcatatgacaatgatgaaacttcattttgttgcgacatttgtggagctattcaagtttat
gctcccaattatggcaaacaaaaagtaaatcctgcaagcaaagatacaagagcatctgct
atgtccaagtctcatgcacaaatttcaatagcaacacccaaaacaaacaatcttgttgat
gtctttcagagcaaaaggcctaatttgtatgagaaagtacaaccagattatagaagtgca
gaatcgaacggtaaagggaaagaggctctaatattatcttcaccggataatgccagtgaa
agtgagagcagttattccagggaaaataaggataccatagcaccattgagcagtaaccta
aaccagttaaagttggataaacatcccatttataacagaaaaacaaatacagaaactcag
taccaaccggaagaatggatgttaatagataaaggaccagggactctgcagcaattgaat
cttgcaattgtcggtcatgtggactcggggaaatctaccttgtctggaagattgctacat
cttttgggaaaagtttccaagaaagaaatgcataaatatgaaaaagaggctaaagaaaag
ggaaaaggttcatttgcttatgcatgggcaatggatgagagctctgcagagagggaaagg
ggtgtgaccatgacagttgctgttgcatactttgactccaagaagtatcatgttgtttta
cttgactctcctgggcacaaagatttggtaccaaatatgatttcaggtgctacacaagca
gatgcagcagttctcgttgtggatgcatcaactggttcctttgaggcaggtatggatggt
tatggtattggacaaacaagggagcatgctcaactagttagaagttttggtgttgagcaa
atcattgttgctgttaataagatggatgttgtggggtattcaaaggaaagatttaatttt
ataaaatcacaacttggtgcatttcttcgttcctgtggattcaaagattcctcaatcatt
tgggttcctcttagtgtggtagaaaaccagaatctggttacaaccaccactgatgttagg
ttatcttcctggtatagagggttttgtctgttggatgcaatagattcattgcagacacct
ctgagggatgtttcaaagccgcttattcttcctatatgtgatgccatcaagacatcaatg
gggaattttgcagcttgtggaaagttagagactggagctatctgtaatggttccaaggtt
ctggttatgcctctaggagagctagcaactatacggtctatcgagcgagactcaattagc
tataattcagcaagagctggtgacaatgtagctgtcaccttacaaggtatcaattctggt
catgttctagctggtggggtgatctgccatcctgattatccgatgcaagtagctaaacat
ttggagctaaagatactcgtcttggacatctccacaccaattctggttggatcgcaggtt
gaattccacatccatcatgcaaaagaggctggaagggtggcaaagatggtagcgttgctg
gaccagaagactggcaaagtctccaaagcaccgcgcatcctcaagggaaaacaaagtgcc
atcatagaggtgcaactggacggagctgtatgtgtggaggagttctctaagtctaaagcc
cttggtagggcattcctaaggtcatcaggaactacaattgcggttggtatcgtgacccga
atacttgagcacgagtcatag
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