Zingiber officinale (ginger): 121992797
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Entry
121992797 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121992797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121992797
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121992797
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
121992797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
121992797
NCBI-ProteinID:
XP_042403307
LinkDB
All DBs
Position
6B:78883783..78891746
Genome browser
AA seq
1498 aa
AA seq
DB search
MDRSQKRKISDGELPVKKRACRSTERLPVSFASRTELQRSISAGSDRGKGLPDHGLLGSD
NRAMGLSKRRVHRVVARLADDGSGESAQLEALTELCEMLSFVMEDAIERFPLEELVPSLL
KLNANGRNPEIMLLAIRALTYLLDARPSSAAAIARHGGITVLCGKLLAIEYLDVAEKCHQ
ALEKISRGYPVACLKAGAVNAVLTYIDFFPSNIQRVAVITVTNMCKELSPDYSSIIMEAV
PSLCTLLQYENKELVETVSTCLAWVAYSVRYSPILTDELCKHGVLEKSLELIDNDSHRSI
SSITFSSLVGLLTRLASHSQLAVRILFELSISRTLRGILIGSDMSHNSAYASTEDVQNNQ
VWEALKLTNQLIPEKKKDVPVNKLIQAKEKILMDEPNFLYQFAMEFLPASIQVVNSGAND
YVCYGCISIIRRIAHYSTPEILLDSIKDTNISSFLAGLLSRKDIHLLISTLEIVEILMQK
LPGVFLSSFIKEGVFYAIDMLLVQDKCIESVPHSDEKIAVSVVSRCMCFAFTPSSVPPSQ
LKTCKLGKDAIHNLGGKIKASYYLGHGAANSDMSCSKTLQHLRTLCRVLDDSMDTHSDDV
GNLHEVKFSTQILDEVMRELSQGESLSTFEFVESGIARSLAHYLCNGKFLLGIHDSGLSD
HILAVQKRFQIFASICLSKPSQNRDDTILACLLKNLQDVLSSLDNFPVVRSQQLKPRKSY
TDIPCSSPTMNPCLKVSFVRDNKDSNLLDFDNVLSIDIASSLVDAVEAYLWPKVSAMNRH
QSEAVDYHISKLNLRASRLHHDSEGSSTEAYMNISYETYISNSLEVIRSQEEQLLPVKTS
SKLTTDTEVAQGRITTVSPCMVNTKPRLTFSLRGKQLDRSKTLYQAVLEDQVSPGFDMIV
GSKFWNQTYEFTYRIAEEDKANKNNMLDLVSQSNIFLNRLGFSFLKLPFFPTKLQAEMLS
NIDRMNTSYDILFMLKILEGLNQFSMELSVNDRIQEFAEGRIDNFDDLKVIVSPVPKVDF
VSSKLTEKLEQQMRDQLVLNTGCFPSWCSQLTSACPFLFSFEARLKYFYLTAFGSLRNQN
NNIRHSDRSSMSSGEWHMVTSFHSRKKFKVDRNNILECATKIMKLHAQSKGSLEVEYADE
VGTGLGPTMEFYTLVSHEFQKVGLGMWREDYCAAKSSVCSDSSVLFAPCGLFPCPWSRKR
SGGIKFSDVKKKFSLLGKLVAKAIKDGRTMDISFSNAFYKIMLEQELNICDIQSFDPDLG
RTLLEFQALVNRKKFVESVSGERDKDPSKLYYRSMAVEDLSLDFTLPGYTDYALASESAK
MVNIANLEEYVALVIDATIGSGVARQINAFKSGFNEVFPLRYLQIFTEDELEQLLCGEQD
TWDFIQLVNHIKFDHGYSVSSLMATNLLEIIQEYDYDQRRAFLQFVTGAPRLAHGGLAAL
NPKLTVVRKHSSFDADLDLPSVMTCANYLKLPPYSSKEIMRERLLYAITEGQGSFHLS
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtagtcagaagcgcaagatctctgacggagaactcccggtgaaaaagcgcgct
tgcagatcgacggagcgcctacccgtctcgttcgcctccagaacagagttgcagcgctcc
atctccgccggttcagaccgcggcaaggggttgcccgaccacggcttgttaggctcggat
aaccgtgctatgggtttatcgaagaggagggtgcacagagtcgtcgctcgcctcgccgat
gatggttcgggggaatccgcgcaactcgaggcactgaccgagctatgcgagatgctctcc
ttcgtcatggaggacgccatcgagcgcttccccctggaggagctcgtgccgtctctattg
aagcttaatgccaatggtcgcaaccctgagattatgcttctggcgattagagcgctaact
tatctcttggacgccaggccttcttcggccgctgctatcgcgaggcatggcggaattact
gtcctctgtggaaagcttttggctatcgaatacttggacgttgcagaaaagtgtcatcaa
gcattggagaagatttcgcggggatatcccgttgcatgtttaaaagcaggcgctgttaat
gcagttttaacttatatcgatttctttccgtctaatattcagcgagtcgcagttataaca
gtaactaatatgtgcaaggaactctcgcctgattattcatcaattataatggaggcagtc
ccttcgttatgcactcttctgcagtatgagaacaaggagctggtagaaactgtttctact
tgtcttgcatgggttgcttactctgttcgctattctcctattttgactgatgaactgtgc
aagcatggagtgttagagaagtccttggaattgatagataatgatagtcacaggtcaatt
agctccattactttttctagtttagttggtctcctcacaagacttgcctcacattctcag
ttagcagttcggatcctatttgagcttagcataagcagaactttgagaggcatcttaata
ggttctgacatgtcacacaattctgcctatgcatctactgaagatgtccaaaacaatcag
gtatgggaagctttaaagttaactaatcagttgattcctgaaaaaaagaaagatgttcca
gtcaataaactaatacaagctaaggagaagattttaatggacgaacccaatttcttgtat
caattcgccatggaatttcttccagcttccatccaggttgtgaactctggtgcaaatgat
tatgtatgttatggttgcatttccatcataagacgtattgcccattatagcacacctgag
atacttctggactcgatcaaagatacaaatatctcaagttttttggcagggctgttgtcc
aggaaagatatacatctactaatttccacactggagattgttgagattctgatgcaaaaa
cttccaggtgttttcttaagctctttcatcaaggaaggagtattttatgcaattgacatg
cttttagtccaagataaatgcatagaatctgtaccacactcagatgagaaaatagctgtc
agtgttgtttccagatgcatgtgttttgcatttactccatctagtgttcccccttctcaa
ttaaaaacatgcaagcttggaaaggatgctattcacaatttgggagggaagataaaagct
tcctactacttgggccatggagcagctaactctgatatgtcatgttctaaaactcttcaa
catctcagaactttgtgcagagtgctagatgatagtatggacacacattcagatgatgtt
ggtaacctacatgaagtgaaattttcaacacaaatattggatgaggtgatgagagagctt
tctcagggagagtctttgtcaacctttgagtttgttgagagtggtattgcaagatctctg
gctcattatttatgcaatggcaagtttctgcttggaattcatgatagtggcttatcagat
cacattctagctgtacagaagagattccagatattcgcttccatatgcttgtccaaacct
agtcaaaatcgtgatgatactattttggcttgcttattgaaaaatctgcaggatgtattg
tcttctttggataactttcctgttgtcagaagccaacagttgaaaccaagaaaaagttat
acagatatcccttgtagtagccccacaatgaatccttgtttaaaagtttcgtttgtacgt
gacaacaaagattcaaacttattggactttgacaatgtactaagtattgatattgcttct
tccttagtagatgctgtagaagcatatctctggcctaaagttagtgccatgaacagacat
cagtcagaggcagtggattaccatatcagcaaactaaacctcagagcttcaaggttacat
catgactcagaagggagttctacagaagcatacatgaacatctcgtatgagacttatatt
tctaattctttagaggtgattagaagtcaagaggagcagcttttaccagtaaagactagc
tcaaaactgacaactgatactgaagttgctcaaggaagaatcacaacagtatctccatgc
atggtgaatactaaaccaagattaacttttagcttgagaggaaaacaacttgaccgctca
aagaccctttatcaagcagttctagaggatcaagtatctccaggatttgacatgatcgtg
gggtccaaattctggaatcagacttatgaatttacttatagaatagctgaagaagacaaa
gcaaacaagaacaacatgttagatttggtttctcagtcaaatatcttcttgaataggctt
ggattctcattcctgaaacttccctttttccctaccaaattacaagctgaaatgctttcc
aacattgatagaatgaatacctcatatgatattttatttatgttgaaaatattagagggc
ttgaatcaattttcgatggaactgtcagttaatgatagaattcaagaatttgcagaaggg
agaatagataactttgatgatttgaaggtgatagtttctccagtaccaaaagttgacttt
gtgagcagcaagctaactgagaagttggagcaacaaatgagagatcagctggtactaaac
actggttgttttccatcatggtgtagccagttaacgagtgcatgtcctttcttattttcc
tttgaggcaagattgaagtacttctacctcacagcatttggttctttaagaaatcagaat
aacaacattcggcattcagatagaagtagcatgagctccggtgaatggcacatggttact
agttttcactcccgcaagaagtttaaagttgaccgcaacaatatccttgaatgtgctaca
aaaatcatgaaattacatgctcaaagtaagggctctcttgaagtagaatatgctgatgaa
gttggtactggtctaggtcctactatggaattctacactctagtaagtcatgaatttcaa
aaggttggattaggtatgtggagagaggactattgtgcagccaaaagtagtgtttgtagt
gattcttcagttttgtttgctccatgtggactgtttccttgtccatggtcgagaaaaagg
tcaggtgggattaaattctcagatgtgaagaaaaagttttcccttcttggtaagctggta
gccaaggcaattaaagatgggagaacaatggacatatcattttctaatgccttctataag
attatgctcgagcaggagctcaatatatgtgatatccagtcatttgatccagaccttgga
aggactttgctggagtttcaagctctagtcaacaggaaaaaatttgttgaatcagtttct
ggagaaagagataaggatccatcaaagttatattacaggagcatggctgtagaggatctc
tctcttgatttcactcttccaggttacactgactatgcactcgcatcagaaagtgcaaag
atggtgaacattgccaatttggaagaatatgttgcactggtcattgatgcgacaattggc
agtggagttgcgagacaaattaatgccttcaaatctggatttaatgaggtattccctcta
agatatctccaaatcttcactgaagatgagttggagcagttactctgcggagaacaagat
acttgggatttcattcagcttgtgaatcacatcaagtttgaccatgggtatagcgtgagc
agccttatggctaccaatttgttagaaatcattcaagaatatgattatgatcagcgtaga
gctttcttgcaatttgtaactggagcacctcgccttgcacatggaggcttagccgctctt
aacccaaagctaacagtagttcgaaagcactctagttttgatgctgatctggacttgccg
agtgtcatgacttgtgcaaattatctaaagctcccaccttactcatctaaagagataatg
agagagagattgctatatgcgataaccgaaggtcagggatcgtttcacctatcatag
DBGET
integrated database retrieval system
