Zingiber officinale (ginger): 121992815
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Entry
121992815 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121992815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121992815
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121992815
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
121992815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
HEAT_EZ
MMS19_N
PSP
RIX1
Motif
Other DBs
NCBI-GeneID:
121992815
NCBI-ProteinID:
XP_042403333
LinkDB
All DBs
Position
6B:complement(79619165..79632560)
Genome browser
AA seq
1909 aa
AA seq
DB search
METRSRKRAEASSSAPSSQTSPVTRRAKRSRTATASSQAPPALSTRSRRSQNLPLSPPSF
SSSAAAAAATVTAPPMDSSAGDSIGRRRRSSGKSHQSSADRDRDAADRGKEAGASRSRDR
DRDAERMLGLSFDGGGADDDNDGEGSLGILHQNLTSASSALQGLLRKLGAGFDDLLPPSA
LSASSSQQSGRLKKILAGLRADGEEDKQFDALNQLCEMLSIGTEDSLGSIAMDSFVPVLV
GLLNHESNPDIMLLAARALTYLCDVLPASCTSVVRYGAVPCFCARLLTIEYMDLAEQSLQ
ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAI
PLLTNLLNYHDAKVVEHASVCLTRIAEAFASCPDKLDELCNHGLLAQAAGLISLSNSGGQ
VSLSTSTYTGLIRLLSTCASGSPLAAKSLLLLGISGTLKDILLSSALVSGSSVSPAMTRP
PEQVYATVNLVDELLPSLPIGTVSLPMLSNVLVKGTATKNSLACTSSKHDGSSETTTEVS
AHGKLLQEQPELLQQFGMDLLPVIIQVYSSSISGPVRHKCLSIIAKLMYFNSADMIQTLL
TVANISSFIAGILACKDPQLLIPALQIAEILMDKLPGTFSKMFVREGVVHAVDALILLES
SSVVPSLPPISEKDSDPSPGIPWRSRRNQRRNGASNTENNSPYDSKGSISEVSNSPTTSE
APLANLNFRSTVSSLAKAFKDKYFPVDADATEAGFTEDLIRLKNLCSKLNAIVENAKKKT
KGKAKASGVYSFDLSASNEEQLNEVIAEMLFELQKGDGVSTFEFIGSGVVLALLDYFTCG
TFEKEKVSEANLPKFRQQALRRYKCFVATALPLEPKDGSKIPMSILVQKLQNALSSLEHF
PVAISPLARSSYGSARFSSGLGALCHPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAV
EDFLWPRVQRSDSAHKSSSSAGNSDPVAAVTSGSAAPTPSTPGHRPSTRSRSSVTIGVPA
KKDVSEVSASSSKGKGKAVVKCSADESRGPQTRNAARRRAASDKETEIKTSHSESTSEWF
MQDELDMSPVEMDDTLMLVDDDISDEEDDHEEVLRDDSLPVCIPDKVHDVKLGDASDEGA
ADCSATDNQVKSISTLNDRSATERATESSEFRRGSVFGSRGAMSFAAAAMAGLASIGGRG
IRVGRDYRGLASGSSSSDHQNKLIFTVGGKQLSKHLTIYQAFQRQLNMDEDDDEKLNGSE
FPSDDNSFWSDIFMITYQKADGQAEKTSQGCSNSSKSFKPASTSDFVSHKKFQGMSLLDS
ILQGELPCDLEKNNPTYNVLALLRVLDSLNQLSAHLRTQAITDDFAEGKISNLDEIYRNG
PKVSPEEFVNRKLTPKLARQMQDALALCSGSLPPWCYQLTKACPFLFPFDTRRQYFYSTA
FGLSRALHRLQQQQNSDNQNSTSEREVRVGRLQRQKVRIARNRILDSAVKVMTMYVSQKA
VLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVELGLWRTNTTSESSVMLIDVNGTDSREND
DSLQEKKAVNDLPVGRQDIVQSPLGLFPRPWPPGADASDGSQFSKVIEYFRLVGQTMAKA
LQDGRLLDLPLSMAFYKLVLGQELELHDILLFDAEFGKILQELQALVLHKQFLDSNAGNN
QMAIADLHFQGASIEDLCLYFTLPGYPEYILKDGGENIMVDVNNLEEYVSLVVDATIKTG
IIRQIEAFRTGFNQVFDISSLQIFSPHELDILICGRIELWEPDSLVDNIKFDHGYTAKSP
AIINLLEIMGEFTAEQQHAFCQFVTGAPRLPPGGLAALNPKLTIVRKLSAAAVNPTSNEN
GVSESVDDDLPSVMTCANYLKLPPYSTKEIMHKRILYAISEGQGSFDLS
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacgtagccggaagcgggcggaggcctcctcgtcggcgccctcttctcagaca
tcacccgtcactcgccgcgccaaacgctcccgcaccgccactgcttcttcccaggctccc
ccggccctctctacgcgctcacgccgttcccagaaccttccgttgtctcctccctccttc
tcgtcttctgctgctgctgccgccgccactgtcactgcccctcccatggactcctccgct
ggagattccatcggtcgtcgccgtcgcagctccggcaagagtcaccagtcctctgctgac
cgcgatcgggatgctgccgacagagggaaggaggcgggggcatccaggtccagagacagg
gatagggacgccgagaggatgttagggttgagttttgatggcggaggagctgacgatgat
aacgatggcgagggtagtctcggtatcctccatcagaatctgacatcagctagcagcgcc
cttcaggggcttcttaggaaattgggtgctggttttgatgatctcttgccgccgtctgcc
ctgtcagcctcttcctcacagcagagtgggcgactgaaaaagatcttagctggtcttcgt
gctgatggcgaggaggataagcagtttgatgccctgaaccagctctgtgagatgctgtcc
atcggaactgaggattctcttgggtcgatagcgatggactcatttgtgccagtgcttgtg
ggacttcttaaccacgagagcaaccctgacataatgctacttgcggccagggccctcacc
tacttgtgtgatgtcctgcctgcttcatgcacgtctgttgttcgatatggtgctgttcct
tgcttctgcgcccgccttctcactatagagtacatggacctagctgaacagtcactgcaa
gctctgaagaagatatcacaagaacacccaacagcttgtttacgtgctggtgcgcttatg
gcagtgctgtcttacctagacttcttttccacaggagttcagagagtggctctctccact
gcagcaaatatgtgcaagaaactcccatccgatgcagctgattttgtcatggaagcaatt
ccattgttgaccaaccttcttaactatcatgatgcaaaggttgtagaacatgcttctgtt
tgcctgacaagaattgcagaagcatttgcatcgtgccctgacaaactagacgagttatgt
aatcatggattgcttgcacaagcagcaggactgatttccctcagcaattcaggaggacaa
gtctctctgagtacttctacatatacgggtttaatccgtctcctttcaacttgtgctagt
ggatctcctctagcagctaaaagccttcttcttttaggaattagtggtactcttaaagat
attcttctgagttctgcacttgtttctggttcttctgtttcacctgccatgactaggcca
cctgagcaggtttatgcaacagtgaaccttgtagatgaacttctgccttccttgcccatt
ggaacagtttctttgccaatgctctctaatgtacttgtgaaaggaacagctaccaaaaat
tctcttgcttgcacttctagcaagcatgatggatctagtgaaactactacagaagtatca
gctcatgggaaattattgcaagagcaacctgaacttctgcagcaatttggaatggatctg
cttcctgttatcatacaagtgtattcttccagtataagcggtcctgttcgtcataaatgt
ttgtctattattgcaaagttgatgtatttcaactcagcggatatgatccagacattgctt
actgttgcaaacatatctagttttatagctggcattttagcatgtaaagacccacaattg
ttgattcctgctcttcagattgcagagattcttatggataagcttcctggaacattttcc
aagatgtttgtcagggagggggttgttcatgctgttgatgcactaatacttttagaatct
tcaagtgttgttccttctcttccgccaatctctgaaaaggacagtgatccttctcctgga
ataccttggcgttctcgtcgtaatcaacgacggaatggtgcttccaacacggaaaataac
tcaccctatgactcaaaaggatctatatcagaagtttctaattctccaactacaagcgaa
gcgccattggcaaatttaaattttcgttctacagttagttccctcgccaaggctttcaaa
gataagtattttccagtagatgccgatgcaactgaagccggattcactgaagatctcatt
cgtctgaaaaatctttgctctaagttaaatgccattgttgaaaatgcaaagaaaaaaact
aaaggtaaagctaaagcctctggggtgtactcctttgatttatctgctagtaatgaggaa
caactaaatgaagtgatagcagagatgctgtttgaacttcaaaaaggtgatggtgtatcc
acttttgagtttattggcagtggggttgttttggcattgttagactattttacttgtggg
acatttgagaaagagaaagtttctgaagccaatttgccaaagtttcggcaacaagctctc
cgaaggtacaaatgttttgttgcaactgctcttcctttggaacccaaggatggtagcaaa
attccaatgagcattttggtccaaaagcttcaaaatgctttatcttctttagaacatttt
ccagttgcaataagcccattggctaggtctagttatggaagtgctcgcttctcctctggt
ttaggggctttatgtcatccttttaagctgcgtttatgccgtgcacaaggtgaaaaatct
cttcgtgattattcatcaaatgttgtgcttattgatccactagctagtctcgctgctgtt
gaagacttcctctggccaagagttcagcgaagtgactcagcacataagtcatcttcatca
gctggcaattctgatcctgtagctgctgttacttctggatctgctgctccaacaccatca
actcctggacaccgtccttcaaccaggtctagatcatcagttacaattggagttccagct
aaaaaagatgtttcagaagtaagtgcaagttcttctaaagggaagggtaaagctgttgtg
aaatgtagtgcagatgaatcaagaggaccacaaacaagaaatgctgcccgcagaagagct
gcttcagacaaagagacagaaataaaaacttcacacagcgagtctacctctgagtggttt
atgcaggatgagttggacatgtctcctgttgagatggatgacacacttatgcttgtagat
gatgacatctctgatgaggaagatgatcatgaagaggtattgagagatgattctcttcct
gtttgtatacccgataaggtacatgatgtcaagcttggtgatgcctctgatgaaggtgca
gctgattgttcagcaactgataatcaggtaaaatcaatatccaccttgaatgacaggtct
gccaccgaaagagccacagaatcttctgagtttcgaagaggaagtgtgttcggttcaagg
ggagcaatgtcattcgctgcagctgcaatggcaggccttgcttcgataggtggaagaggt
ataagagttggccgagattatcgtggacttgcctcgggtagtagttcaagtgaccatcag
aacaagctgatattcacagttgggggaaagcagcttagcaagcacttgactatttatcaa
gctttccagcgccaacttaatatggatgaggacgacgacgagaagctcaacggatctgaa
ttccctagtgatgacaatagcttctggagtgatatatttatgataacataccaaaaagct
gatgggcaggctgaaaaaacttcacaaggatgttcaaattcttcgaagtctttcaaacct
gcatctacttctgatttcgttagtcacaaaaaatttcaaggaatgtcccttcttgatagc
atcttgcaaggggagcttccttgtgatcttgaaaaaaacaatcccacatataatgtatta
gcattattacgtgtcctggatagcttaaatcagttgtcagcccatctgagaacccaggcc
attactgatgattttgcagaaggaaagatttctaatttggatgaaatttatagaaatggt
ccgaaggtatcacctgaggagtttgtgaatagaaagttaactccaaagctggctcggcaa
atgcaggatgctcttgccctttgtagtggaagccttcctccatggtgctaccagttgaca
aaagcatgtccttttcttttcccatttgacaccaggaggcaatatttctattcaacagct
tttggcctttctcgagcattgcatcgacttcagcaacaacagaattctgataatcagaat
tcaactagtgaaagagaggttcgagttggcagactgcaaagacaaaaggttcgtatagcc
agaaaccgtatcttggactctgctgtaaaggttatgacaatgtatgttagtcaaaaagct
gtccttgaagtagaatattttggtgaggtaggcactggactgggcccgacattggaattc
tatacccttttaagtcatgatttgcagaaggttgaattgggtttatggaggaccaacact
acatcagagagttctgtaatgctaatcgatgtaaatggaacagatagtagagagaatgat
gatagtttacaagaaaagaaagcagtcaatgatttgcctgttggaagacaggatatcgta
caatctcctcttggtttattccctcgtccttggcctcctggtgcagatgcttcagatggt
agtcagttttcaaaggttatagagtattttcgtttggttggtcagactatggcaaaagct
ctacaagatggccgacttctggatttgccactttcaatggcattctacaaacttgtgttg
ggccaagagcttgaattgcatgacattctcttatttgatgctgagtttggaaagatattg
caagaattgcaagcccttgtactccacaaacaatttctggattcaaatgctggtaataat
caaatggcaattgcagatttacatttccaaggtgcctcaattgaagacctgtgcttatat
tttacccttcctggttatcctgaatacattcttaaagatggaggggaaaatatcatggtt
gatgttaacaacttggaagagtatgttagtttagtagttgatgcaactattaagacaggc
attataagacagattgaagcatttagaaccggtttcaatcaggtctttgacatctcctct
ttacaaatattttctccacatgaacttgacatcctaatctgcggtcggatagaactgtgg
gagcctgactctctagtggataatataaagtttgaccatgggtacactgctaaaagtcct
gcaattattaatttacttgagataatgggtgaattcacagcagagcagcagcatgctttt
tgccaatttgtaactggtgctccaaggcttccacctggtggtttagcagcattaaatcca
aagctgaccatagttaggaagctttctgcagccgcagttaacccgacgtctaacgagaat
ggggtctctgaatcggtggatgatgatttgcctagtgttatgacctgtgcaaattacctc
aaactcccaccctactcaactaaggaaatcatgcacaaaagaatcctttacgccatcagc
gaaggccagggttcctttgatctctcgtga
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integrated database retrieval system
