Zingiber officinale (ginger): 121992898
Help
Entry
121992898 CDS
T08725
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121992898
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121992898
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121992898
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121992898
Exosomal proteins of bladder cancer cells
121992898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
TPR_COPA_B
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Nup120_160
Beta-prop_ACSF4
ENTH
Fis1_TPR_C
Beta-prop_At4g14310
PAPS_reduct
ThaI
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
121992898
NCBI-ProteinID:
XP_042403455
LinkDB
All DBs
Position
6B:complement(83543580..83553958)
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGVSFHSKRPWVLASLHSGVVQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHDEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTIRVWDISSLRKKVAPADDLLRL
GQINSDLFGGVDAVVKYVLEGHDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAWEV
DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHPE
LNLLAAGHDSGMIVFKLERERPAFSVSGDALYYVKDRFLRVYEFSSQKDNQVVPIRRPGS
VSLNQGPRTLSFSPTENAVLICSDVDGGSYELYIVPKDAAGRGDYMQDARKGAGASAVFV
ARNRFAVLDKSSNQAIVKNLKNEIVKKSPLPIGTDAIYYAGTGNLLCRAEDRVLIFDLQQ
RIVLGELQTPSVKYIVWSSDMESVALLGKHTIVIANKKLVHRCTLHETIRVKSGAWDDKG
VFIYTTLNHIKYCLPNGDGGIIKTLDNTIYITKVSGNNIYCLDRDGKNHTISIDSTEYVF
KLSLFHKRYDHVMNMIRNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQ
IAVASAKEIDDKDHWYRLGIEALRQGNTSIVEYAYQRTKNFERLSFLYLITGNEEKLSKM
LKIAEIKNDIMGQFHNAMYLGDVHERIKILEHAGHLPLAYVTAVSHGLKEIASRLATELG
ENVPTLPEGKKRSLLLPPSSLICCGDWPMLRVMRGIFDNGLDTGKAGNEEEEDASNADWG
DEELDIVDVDDMIQNADIGITAELDDGIPNEDNEEGGWDLEDLELPPDADTPKASGNATS
LFVAPTPGMPVSQIWIQKSSLAGEHVAAGNFDTAMRLLTRQLGFKNFAPLKPLFMDLLLG
SHTYMNAFASAPAMSNAVERNWSESASPNVRGPPALIFKFFQMDEKLKAAYRATTDGKFP
EALRLFLNILHAIPLIVVDSRREVDEVKELIEIAREYVLGLKFEVKRKELKDNSVRQQEL
AAYFTNCKLQKIHSRLVLTNAMTICYKGGNFATAANFARMLLENGPTEIQAKKARQVLQH
AGDRQDANQLNYDYRNPFVVCGETYVPIYRGQKDVSCPYCGARFVPSAEGHLCSVCELAV
VGADASGLLCSPAQSR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaaattcgagacgaagagcaatcgggtgaagggggtgagcttccacagcaaa
cggccctgggtgctggccagccttcacagcggcgttgtccagctatgggactaccgcatg
ggcaccctcatcgaccgctttgacgagcacgacggccctgttcgcggagtccacttccac
aaatcccaaccccttttcgtctccggaggagatgattataagattaaggtctggaattat
aagacacaccggtgcttgtttaccctccttggtcatcttgattacattcgcactgtgcaa
ttccatgatgagcatccatggatcgttagcgcaagtgatgatcaaactattaggatttgg
aattggcaatctcggacctgtatttcggtattgacagggcacaaccactatgtgatgtgt
gcctcgtttcatccaaaagaagacctggttgtttctgcatccctggatcaaactatccgt
gtttgggatattagttcccttaggaaaaaggttgcgccagctgatgatctcctgcgtttg
ggtcagataaactcagatttattcggcggtgttgatgctgttgtcaaatatgtcttggaa
ggtcatgatcgtggagtcaattgggcatcattccatcctagtttgccactcatcgtgtct
ggagcagatgatcgacaagtaaaattatggagaatgaatgatacaaaagcttgggaagtg
gacactttgagaggtcacatgaataatgtttcctgtgtgatgtttcatgcaaagcaagat
atcattgtatctaactcagaagacaaaagcattcgcatttgggatgctacaaaacgaaca
ggtattcagacatttcgcagggaacatgaccgtttctggattcttgcagcacatcctgaa
ttgaaccttctggctgctggtcatgatagtggcatgattgttttcaaattggagagggaa
cgacctgctttctctgttagtggagatgctttatactatgtgaaagatcgattcttgcga
gtctatgagttctcatctcagaaggacaatcaggttgttcccataagaagacctggttca
gttagcttgaaccaaggacctagaacattgtcttttagccccactgagaatgctgtcttg
atctgttctgatgtggatggtggatcatacgagctttatattgttcctaaagatgctgct
ggaagaggtgattatatgcaggatgcaaggaagggagcaggggcatcagctgtttttgta
gctcgtaatagatttgctgttcttgataagagtagcaatcaagccatagttaagaatctt
aaaaatgagattgtaaagaagagccctctgccaattggtactgatgctatatattatgct
ggcactggtaatctgttgtgcagggctgaggacagggtgcttatttttgacctccaacag
aggattgtacttggagaacttcaaactccatctgttaaatacattgtgtggtcaagtgac
atggaatcagttgctttgctaggtaaacatacgatagtaattgctaataagaaacttgtg
caccgttgcacattgcatgaaactatccgtgtgaaaagtggtgcatgggatgacaaaggt
gtgtttatctatacaacattaaatcatatcaagtattgccttcctaatggagatggagga
ataataaaaacacttgacaacactatttacataaccaaggtttctggaaacaatatctat
tgcttggatcgagatgggaagaaccatacaatatcaattgattcgacagagtatgtcttc
aagctctccctgtttcataaacgttatgatcatgtgatgaatatgatcaggaactcacaa
ctttgtggtcaggctgtcatttcatatctacagcagaaaggctttcctgaagtggctctc
cattttgtgaaagatgaaaagactagattcaacctagctcttgagagtggtaacattcaa
attgctgttgcttcagcaaaagagattgatgataaggatcactggtacaggttgggtatt
gaggctcttcgacaaggaaatactagcattgtggagtatgcatatcagaggacaaagaac
tttgagaggttatcttttctttatctcataactggtaacgaggagaagctgtccaaaatg
ctgaaaatagctgaaatcaagaatgatattatgggccaattccacaatgccatgtatctt
ggtgatgtccatgagcgtataaagatattggagcatgctggtcatttgcctctagcatat
gtgacagctgtgagtcatggactcaaggaaattgctagcaggcttgctactgagttgggt
gaaaatgttcccactttacctgaaggtaaaaaacgttctcttctcctgccaccttcatct
ctgatttgctgtggggattggccaatgctgagggtaatgagaggtatttttgacaatggg
ctggacactggtaaagcagggaatgaggaagaggaagatgctagcaatgctgactggggc
gatgaggaattggacattgttgatgtggatgacatgatacagaatgctgatataggtata
actgcagaacttgatgatggaattccaaatgaagataacgaggaaggaggatgggacctt
gaggatttggaactaccaccagatgctgatacaccaaaagcttctggcaatgctacttca
ttatttgttgcccctactcccggcatgcctgttagccaaatatggattcagaagtcatct
ctggcaggtgagcatgtagctgctggaaattttgatacagccatgcgcttgcttacccga
caattgggtttcaaaaattttgctcctctgaagccgcttttcatggatcttcttctggga
agtcacacctatatgaatgcatttgcttccgctccagctatgtcaaatgctgttgagaga
aattggagtgagtctgcaagtcctaatgtgagaggaccaccagcactcatatttaagttt
ttccagatggatgagaagctaaaggcagcttatagagccacaactgatggaaagtttcca
gaggctctacgcctatttctcaatattttgcatgctattccgcttatcgtagtggactca
agaagggaagtcgatgaagtgaaggagttgattgaaattgccagagagtatgttctgggc
ttaaaatttgaggtcaaaagaaaggaacttaaggacaattcagttcgacagcaagaactt
gcagcttatttcaccaattgtaagcttcagaagattcattcaaggcttgtcctcactaat
gctatgactatctgctataagggaggaaattttgcgacagcagcaaattttgccaggatg
cttctggagaacggcccaactgaaatccaagcaaaaaaggcaagacaggtgcttcaacat
gctggtgatagacaggatgctaatcagctcaattatgattatagaaatccttttgtagtg
tgtggggaaacttatgttcctatttatcgggggcagaaagatgtttcttgtccttattgt
ggggctcggtttgtaccctctgctgaggggcatctctgctctgtctgtgagcttgcagtg
gtgggagcagatgcctcaggtctgctttgctctcctgcacaatcaagataa
DBGET
integrated database retrieval system
