KEGG   Zingiber officinale (ginger): 121992909
Entry
121992909         CDS       T08725                                 
Name
(RefSeq) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
  KO
K05544  tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
Organism
zof  Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:zof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:zof03016]
    121992909
Enzymes [BR:zof01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.1  With NAD+ or NADP+ as acceptor
    1.3.1.89  tRNA-dihydrouridine47 synthase [NAD(P)+]
     121992909
Transfer RNA biogenesis [BR:zof03016]
 Eukaryotic type
  tRNA modification factors
   Dihydorouridine synthases
    121992909
SSDB
Motif
Pfam: Dus zf-CCCH_DUS3L zf-CCCH_4 zf-CCCH zf_CCCH_4 DEAD_2 zf-CCCH_PAN3 zf-CCCH_2 TSP1_CCN Herpes_U44 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 121992909
NCBI-ProteinID: XP_042403480
LinkDB
Position
6B:84744636..84761149
AA seq 687 aa
MEPPLEMESAVGGESVGVSVFEGAACPGPEDLVARAIAPVKSQYLRAPPPRSGSLGSEVV
DNANEKSSVPKVVVTKEKKSRRQLKRERKQEQESAKKICPEIAKTGNIGACRYNDNCRFS
HDLDAYLAEKSPDLEGICPFINVDETCPYGITCRYSNTHKQCTSLKPNSSAKRSSEVNCL
NKDLQKLLWKDKVSFPKADFQLQLLGLKVGKSRHMNSEADIVKDHQEADNKQVLCSSEFT
QDCSPMYIENECLGSDFISEDPSRLLKKPKSKYDESNFESDISHGTNLEKEKIQDGQDCS
LHNGQESVSSDCLCSEVESLKPHARERKLIDFRGKLYLAPLTTVGNLPFRRICKGLGADI
TCGEMAMCTNLLQGQASEWALLRRHLSEDTFGVQICGAYPDTVARTIELIDRECTVDFFD
INMGCPIDVVVNKGAGSALIMKPMRMKSIIQAAASTVLTPLTVKVRTGYFEGRNRIDSLV
SDIGKWGACVLTIHGRSRQQRYSKLADWDYIYECARKAPDDLQILGNGDIFSYTDWIKRT
SDCPPLASGMIGRAALIKPWIFTEIKEQRHWDITSGERFNILKDFVQFGLQHWGSDAKGV
ETTRHFLLEWLSYTCRYVPVGLLEIIPQRINWRPPSYYGRDDLETLMASDSAADWIRITE
MLLGKVPEGFSFAPKHKSNAYDRAENG
NT seq 2064 nt   +upstreamnt  +downstreamnt
atggaacctccactggagatggagtcggcggtcggcggtgagagtgtcggggtttccgta
ttcgagggcgccgcctgtccgggaccggaggatttggtggccagagcaatagcccctgta
aaatcccagtacttgcgtgctcctcctcccaggtctggctctcttggcagtgaagtcgtc
gacaacgccaacgagaagagcagtgttccgaaggtagtcgttaccaaggaaaagaaatcc
cggcggcagctcaagagagaacgaaagcaggagcaagagtctgcaaaaaaaatttgtcct
gaaattgccaaaactggaaatattggtgcctgccgttataatgataattgtcgctttagt
catgatttggatgcatatttggcagagaaatcaccggatttggaagggatttgtccattc
attaatgttgatgaaacatgtccctatgggataacttgtagatattcaaatactcacaaa
caatgcacatcattaaagcccaattcatctgctaagaggagctctgaggttaattgtcta
aataaagatctgcagaagctattgtggaaggacaaagttagttttcctaaggcagatttt
cagctccagctccttggtctaaaggtgggtaagagtagacatatgaattcagaagctgat
attgttaaagaccatcaggaagctgataacaaacaagtgctttgcagctctgaatttaca
caagactgttctccaatgtatatagaaaatgaatgtttggggagtgattttatttctgag
gacccctccagactcttgaagaagccaaagagtaaatatgatgagagcaactttgaatca
gatattagtcatggaacaaaccttgaaaaagagaaaattcaagatggtcaagattgtagc
ttacataatggacaggaaagtgtttcatctgactgcttgtgttctgaagttgaaagtctg
aaaccacatgctagggaaagaaagctcattgacttcagagggaagctatacctcgccccc
ctaaccacagttgggaatcttcccttcagaaggatatgcaagggtttgggagcagatatt
acatgtggggaaatggctatgtgtacaaatctcttgcagggacaggcttcagagtgggca
ctgctgaggcggcacttgtcggaggatacttttggtgtacaaatttgtggtgcttatcct
gatactgtggcacgtactattgagctcatcgatcgcgaatgcacagttgacttttttgac
atcaatatgggatgcccaattgatgttgtcgtaaacaaaggtgctggatctgctctaatc
atgaaaccaatgagaatgaagagcattattcaagctgctgcgtccacagttttgacacct
ttgacagtgaaggtaagaacaggctattttgaagggagaaatcgcattgattctctagta
tcagatataggcaaatggggagcctgtgtgttgactatacatggtcgatcacgacaacaa
cgatatagcaagcttgctgattgggattacatctatgaatgtgctagaaaagccccagat
gatctgcaaattttagggaatggtgacattttctcatatactgactggatcaagcgtaca
tctgactgccctccacttgcatccggaatgattggtagagctgctctaataaagccttgg
atatttactgagattaaggaacaaagacattgggatattacatctggagagagatttaat
attctaaaagattttgtacaatttggcctgcaacattggggctctgatgctaaaggtgtg
gagacaacacggcatttcttgttggaatggcttagttacacatgccgctatgtaccagta
ggtctgttagaaatcattccccaacgtataaactggagaccacctagctactatggacga
gatgatctcgagaccttaatggcatctgattcagctgctgactggattcggataactgag
atgttacttggaaaagttcctgaaggctttagttttgcacctaaacacaagtctaacgca
tatgaccgcgctgaaaatggctaa

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