Zingiber officinale (ginger): 121993226
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Entry
121993226 CDS
T08725
Name
(RefSeq) protein SPA1-RELATED 4-like isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121993226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121993226
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
121993226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
WD40_MABP1-WDR62_1st
Pkinase
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Beta-prop_WDR75_1st
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
121993226
NCBI-ProteinID:
XP_042403865
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Position
6B:94489852..94500067
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AA seq
850 aa
AA seq
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MDGPWRRRRRRKESAIKAGNMWFSSQVGAAAADPYPPPFASFLERQGPSKKRRRRRRRRR
RRRERSKVMRGLEDAAGPRGEVEDEDEPAATAEDEVSLRQWVDQPSRAVDLLQCLHIFRQ
IVDAVNAAHAQGVVVGGVRPSCFVMSSLDRVSFIESASCSESSEDDDLTSGRSRLGGGSS
RMVASEEPSGGVEDEKAAFPMKKVLQMEAAWYTSPEEDAGKPATFASDVYRLGVLLFELF
YSFESLEEKFISMANLRHRVLPPQLLLKWPKEASCCLWLLHPHQDTRPKMSGVLESEFLN
QPKDSLEERDAAIKLKEETEDQELLLEFLLHLQLKKKEIVDQLHNTIRFLTADIEEVTHQ
KSILSKKSCSKLDKDDRSSKEKLYEPLLDSVKDEYSFNSDARKRLRPDLQNSIQEKHYNV
GAKDPRPKKVQQIQENPLSKSSRLMKNCEKLEAVYVSKRCRTVKQESQPGNKFIHIISSG
KGSSFRPPHGSSVDDWDYDVENVGRNEWINPFLKGMCKYLAFSRLKVRADLKQGDLLNPR
NLVCSMGFDRDKEFFATAGVNKKIKIFECNTILNGDRDIHYPVAEIINASKISCICWNSY
IKSHIALSDFEGVVQAWDATRNQVFAVMREHEKRVWSVDFSLTDPTKLASGSDDGAVKIW
NINQAGSVCTIRTKANVCSVQFQPDSAYSLAIGSADHKIYCYDLRNLRIPRCTLVNHMKT
VSYVKYLDSLSLVSASTDNSIKLWNLPASASGIIESPLQTFTGHANIKNFVGLSTSDGYI
ATGSETNEVFIYYKSFPMPVLSYKFGVTDPISGKEMDDASQFISSVCWQGETSTLLAASS
TGNIKLLEMV
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggatgggccatggcggaggaggagaaggagaaaagaaagcgcaattaaagctgggaat
atgtggttcagttctcaggttggagcagcggcagcagacccttatccccctccgtttgct
tcattcttggaacgacaaggaccaagtaaaaaacggaggaggaggaggaggaggaggagg
aggaggagagaaaggagtaaagtaatgcgtggtttggaggatgcggctggtccccgcggc
gaggtcgaggacgaggatgaaccggctgcgacggcggaggatgaggtcagcctgcggcaa
tgggtggaccagcccagccgggcagtggatctgctccagtgcctccacatcttccggcag
atcgtcgacgccgtcaacgctgcccacgcccagggcgtggttgtcggcggcgtacgcccc
tcctgcttcgtcatgtcttccctggatcgcgtttccttcatcgagtccgcctcctgttcc
gaatcctcagaggacgacgatttgacgtcgggccgctcaaggcttggcggtggttcctcc
cggatggtggcctccgaggagccgagtggcggggtcgaggacgagaaggcggcgttcccg
atgaagaaagtgctgcagatggaggccgcgtggtacacgagcccggaggaagatgctggg
aagccagctacatttgcatcggatgtttaccgattaggtgtccttcttttcgagctgttc
tactcgttcgagtcgctagaggagaagtttatatcgatggccaacttgagacaccgtgtt
ctgccgccacagcttctgctcaaatggcccaaggaagcctcctgctgcctttggctgttg
catcctcaccaggatacccggcctaagatgagtggagtattggaaagtgagttcctcaat
caaccaaaggatagtttggaggagcgtgatgcagcaattaagctgaaagaagagacagaa
gaccaagaattattgctggagtttcttttacatttgcagttaaaaaagaaggaaattgtt
gatcagttgcataataccatccgttttcttactgctgacatagaagaagtcacacaccaa
aaatcaattctcagtaagaaatcatgttcaaaactggacaaggatgatcgatcatcaaaa
gaaaaattatatgaacctttattggattctgtaaaagatgaatattcattcaactcggat
gctagaaaacgcttgagacctgaccttcagaattccatccaagagaagcactataatgtt
ggtgctaaagatccaagacctaaaaaggttcagcagattcaggaaaatccattatcaaag
agctcccgattgatgaaaaactgtgaaaagttggaggctgtctatgtttccaagagatgc
aggacagtgaaacaagaaagtcaaccaggaaacaaattcattcacattatcagtagtggc
aaagggtccagttttaggcccccccatggaagttcagttgatgattgggactatgatgta
gaaaatgttggtagaaatgaatggattaatccttttcttaaaggcatgtgcaaatatcta
gcatttagtaggttgaaagtgagggctgatcttaaacaaggtgatctactgaatccaagg
aatttagtatgttcaatgggttttgatcgggataaagaattttttgctactgctggtgta
aataagaaaattaagatttttgaatgcaacactattctgaatggagatcgtgatattcat
tatcctgtagcagaaattattaatgcctcaaagataagctgtatctgttggaacagttat
atcaagagccatatagccttgagtgactttgagggtgttgtacaggcatgggatgcaaca
agaaaccaagtttttgcagtaatgagagagcatgagaaacgagtatggtctgttgacttt
tctctcacagatccgacgaaattggctagcggtagtgatgatggcgctgtgaagatatgg
aatatcaatcaggctgggagtgtttgtactatcagaactaaggcaaatgtgtgctctgtg
caatttcaacctgattctgcttattcacttgcaattggttcagcagatcacaagatctac
tgttacgatctccgtaatttaagaatacctcgttgtactctggttaaccatatgaaaact
gtgagctatgtcaagtacctggattcattgagtctagtatctgcatctactgataactca
ataaagctatggaacttacctgcaagtgcatcaggaataatagaaagtcctcttcaaact
ttcactggccatgcaaacatcaagaatttcgttggtctttctacctcagatggatatatt
gctacaggttctgagacaaatgaggttttcatctactacaaatctttcccaatgcctgtt
ttgtcatacaaatttggcgttaccgatccaatatctggcaaggagatggatgacgcatcg
cagttcatatcttctgtatgctggcagggtgagacctccacgttgctcgcagcaagttcc
accggcaacattaagctcttggagatggtttaa
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