Zingiber officinale (ginger): 121993810
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Entry
121993810 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121993810
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121993810
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GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121993810
NCBI-ProteinID:
XP_042404047
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Position
6A:3690291..3691731
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AA seq
402 aa
AA seq
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MESSSTVRFVFFSSLFLASAAHIADFDSYWQKRADEATNQARRSYDPDPVSLTRQFNHQV
DLAKQKQKGRGLRGANRMLVGLCQATNPIDRCWRCRSNWADRRRQLAECAQGFGRRAGGG
KAGELYVVTDASDSDVVDPKPGTLRFGVVQDRPLWIVFARDMVIRLAEELIVTSNKTIDG
RGADVRIAGGAGLTLQFVHNVILHGLRIHDIKAGNGGMVRVSESHVGRRTRSDGDGISIS
GSSDIWIDHVSVANCMDGLIDAEQNSTAITVSNCHLTQHNDDAMPFGESESYSGDAITQI
TLAFNHFGAGLVRRLPRCRWGFCHIVSNDYAHRTMEDAVGGRKNPTILGYATESENGASS
VESGSPELKQEFPSKENELIGSYVSRLTRFAGALDCVADQQC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaagctctacagtgaggttcgtgttcttctcgtccctcttcctggcgtccgcc
gcccacatcgctgacttcgattcgtactggcagaagcgggcagacgaagccaccaaccag
gcccgcagatcctatgacccggatccggtatccctaacccgacagttcaatcaccaagtt
gatttggcgaagcaaaagcagaagggcagaggccttcgcggcgcgaaccggatgctcgtc
ggcctgtgccaggcgacgaaccccatcgaccgttgctggcggtgcaggagcaactgggcg
gaccgccggcggcagctggcggagtgcgcgcaggggttcggccggcgcgccggcggcggg
aaggccggcgagttgtacgtggtcaccgacgcctccgactccgacgtcgtcgacccgaag
ccgggcaccctccggttcggcgtcgtccaggaccgccccctctggatcgtcttcgcccgc
gacatggtcatccgactcgcggaggagctcatcgtcaccagcaacaagacgatcgacggc
cgcggcgccgacgtgcggatcgccggcggagccggcctcacgctccagttcgtccacaac
gtcatcctccacggcctccgcatacacgatatcaaggcagggaacggcggcatggtccgc
gtctctgagagccacgtcggccgccgcacccggagcgacggcgacggcatctccatctct
ggatccagtgacatctggatcgatcacgtctccgtggccaactgcatggatggtctcatc
gacgccgagcagaactccacggccatcaccgtctccaattgccacctcactcaacacaac
gacgacgcaatgccgttcggcgaaagcgagtcctactccggcgacgcgatcacgcagatc
acattagccttcaaccacttcggagccggccttgttcggagactgcccagatgccgatgg
ggtttctgccacatcgtgagcaatgactacgcccaccggacgatggaggacgccgtcgga
ggaagaaagaatccgacgatcctcggctacgcaactgagtcggagaacggagcatcctcc
gtggagtcgggatcgccggagctgaagcaggagtttccgagcaaggagaatgagctgata
gggagctacgtcagcagactcacgcgatttgccggcgctctcgactgcgtcgccgatcag
caatgctga
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