Zingiber officinale (ginger): 121995498
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Entry
121995498 CDS
T08725
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121995498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121995498
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121995498
Spliceosome [BR:
zof03041
]
Complex C
Other components
Step II factors
121995498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
LRR_8
Motif
Other DBs
NCBI-GeneID:
121995498
NCBI-ProteinID:
XP_042405159
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All DBs
Position
6A:complement(149728734..149749902)
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AA seq
765 aa
AA seq
DB search
MPAVVKLRSAVYLSRNKFSGETPDGAFEGMSWLKKLYLADNGFSGPMPKSLACLLKLLEL
QLDNNRFRGSIPIIQSWSAKLNIMYCITDFFACLAFRRTSSVQATTRLCAGNNKAPPLTK
EHEHTAPKLIFVQQGGPRFELKDLLKSSAELLGTGAYELAGEAVAPQLAATVGLLLQEGR
EAAGHRLCPQQEPRHCSPREAQLDPFLSRYSVIIIDEAHERTVHTDVLLGLMKKVQLARS
HATNKENNLSKEAGDGLAKSGNFSLMPCQNAKLTSLKLIIMSASLDARCFSEYFCGAKAV
HIHGRQYPVEILYTYQPEPDYLDATLITIFQIHLEETAGDILAFLTGQDEIESVERLINE
RIKQLPDSSQNLLVVPIYASLPSEQQMNAFKPAPSGFRKVILATNIAETSVTIPGIKYVI
DAGLVKARSYNPVTGMESLIIIPTSKAQALQRSGRAGREGPGKCFRLYPESEFGKLADTT
VPEIKRCNLSNVVLQLKALGIDDIIGFDFMEKPSRMTIVKSLEQLFLLGALTDDYKLSSP
VGHQMAKLPLDTMYSKALILAAEFKCLEEMLIVVAMLSVESIFYFPREKLEEARAARKSF
SSPEGDHITMLNVYRTSAESLERNKFANVKEKTLEKKLNKWCRENFINYRSLRHARDIHS
QIEGHIQEMGFPASSCGDNTLQFRRCLTASFFLNAAMKQPDGSYRALASGQTVQVHPSSM
LFRTKADCIIYNELVRTNQNYIRNVTRVDPLWLPELAPQYFAANG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgccggcggtcgtcaagctgcggagcgcggtctacctgtcgaggaacaagttctccgga
gagacacccgacggagccttcgagggcatgagctggctcaagaagctctacctcgccgac
aacggcttctcggggccgatgcccaaatccctcgcctgcctgctgaagcttctcgaactc
cagctagataacaatcgcttcaggggctcgattccgatcatccaatcgtggagcgcaaag
ctcaatattatgtattgtataaccgatttcttcgcctgcttggcatttcgtcgtacatct
tctgtgcaagcaacgacaaggctctgcgcaggcaacaacaaggcgccgccgttgacgaaa
gagcacgagcatacggcgccgaagctgatcttcgtgcagcaaggaggtcctaggttcgag
ttgaaggacctgctgaagtcgtcggcggagctgctggggaccggagcatatgagctggct
ggggaggctgtcgcaccccaacttgctgccactgttggcttattactacaggaaggtcga
gaagctgctggtcaccgactatgtccccaacaggagcctcgtcattgctctccacgggaa
gcacagctggatccctttctgtctagatatagtgtcatcattattgatgaagctcatgaa
agaacagtgcacacagacgtgctgcttgggttgatgaagaaagtgcaacttgcacggtct
catgctactaataaggagaacaacttgagcaaggaagctggtgatggcctagcaaagtct
ggcaacttctcccttatgccatgtcaaaatgcaaaacttacttccttgaagttgataatt
atgtctgccagtttggatgcacggtgcttctctgagtacttctgtggtgcgaaagctgtt
cacattcatgggcgccaataccctgtagaaatactttatacttatcaacctgagccagat
tacctcgatgctaccctaattaccatttttcagatacatttggaggagactgctggagat
attcttgcatttttaactgggcaagatgagattgaatcggttgaaaggctcatcaatgaa
cgcatcaagcaactgcctgatagcagtcaaaatcttctggttgtccctatttatgcatca
ctcccctcagagcaacaaatgaatgcctttaagcctgctccttctggttttcgaaaggtt
attctagcgacaaatattgcagaaacttctgtaactattcctggtattaaatatgttata
gatgctgggttggtcaaagctcgttcttacaatccagtgactggtatggagtcattgatt
atcattcctacctcgaaagcacaggctcttcaaagaagtggtcgtgccggacgagaaggg
cctggaaagtgctttcgattgtaccctgagagtgagtttggtaaacttgcagatactact
gttcctgagatcaaaagatgcaacctctccaatgttgttttgcagctaaaagcccttggt
attgatgatatcattgggtttgatttcatggaaaaaccttctaggatgactatagtgaaa
tctttggaacagctgttcctacttggggctttgactgacgactacaagctctcaagtcca
gttggacatcagatggcaaagctgcccttggatactatgtattcaaaggcacttatcttg
gctgccgagtttaaatgcctggaagaaatgttaatagttgtcgctatgctctctgtggag
tccatattttactttccacgagaaaaattggaagaggcaagagctgcccgaaagagtttt
tcaagccctgaaggagaccacataactatgttaaatgtgtaccgcacatctgcggaaagc
ttggagaggaacaaatttgcaaatgtcaaagagaaaacattggagaaaaagttaaataaa
tggtgcagggagaacttcatcaattatcggtctcttcgacacgcacgggacattcacagt
caaattgaaggtcatatccaggagatgggttttcctgcatcatcatgcggcgacaataca
cttcagttccgcagatgccttactgcttcgttcttccttaatgcagcgatgaagcaacca
gacggatcatatagagctttagctagtggtcagaccgtgcaggtgcatccttcttcaatg
ttgttccgcacaaaggcggattgtatcatctacaacgaactagtccgaacgaatcaaaat
tacattcgtaatgtgactcgagtggacccattgtggttgccggagctagctccacagtac
tttgccgccaatggctag
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