Zingiber officinale (ginger): 121995559
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Entry
121995559 CDS
T08725
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
KO
K03267
peptide chain release factor subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121995559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121995559
03012 Translation factors [BR:
zof03012
]
121995559
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121995559
Translation factors [BR:
zof03012
]
Eukaryotic type
Release factors
121995559
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
G-alpha
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
121995559
NCBI-ProteinID:
XP_042405214
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Position
6A:complement(1894681..1910306)
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AA seq
536 aa
AA seq
DB search
MEDESRVEDLPHQPSVVDDGVTEDWSKEEDDPVAEDHPPSAAATDLADPQSEDTTAEIQT
VIQSLQLETGVKDKKATTDEEAEELDDKEENKKRHLNVVFIGHVDAGKSTAGGQILLLSG
QVDERAIQKYEKEAKDKNRDSWYMAYIMDTNEEERVKGITVEVGRAHFETENTRFTVLDA
PGHKSYVPNMISGASQADVGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLVIVV
NKMDDPTVRWSKERFDEIESKMVPFLKSSGYNVKKDVQFLPISALLGANMKIRMEKSICD
WWSGPCLFEVLDAIEIPPRDPKGPVRMPIIDKYKDMGTVVMGKLESGSINEGDNLFVMPN
KASVKVLSIICDEKKVRRAGPGENVKVKLAGVEEEDILAGFVLSSVAKPIGAFYEFNAQL
QILELLDNAIFTAGYKAVLHIHSIVEECEVIDLLEEIDTKRRKEEDPRKKAKAKRKPLFV
KNGAVVVCRIQVTNLICIENFSDFAQLGRFTLRTEGKTVAVGKVVALPPAGSVTFA
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaatcgcgtgtggaggaccttcctcaccagccttccgtcgttgacgacggt
gtcaccgaggattggagtaaggaggaggatgatcctgtggcagaggaccaccctccctca
gctgccgccactgacctggcagatcctcaatctgaagacacaacagcagaaattcagact
gttattcaatcattacagctggaaacgggagtgaaagataagaaggcgactacagatgag
gaagctgaagaacttgacgacaaagaagaaaacaagaagagacacttaaatgtcgtgttc
attggtcatgttgatgctggtaaatcaacagctggtggtcaaattcttttactcagtggt
caagttgatgaacgagcaattcagaagtatgaaaaagaggccaaggataaaaatcgagac
agttggtatatggcttatatcatggacaccaatgaggaggagcgtgtaaagggaataact
gtggaggttggtagagcacattttgaaacagagaatacaaggtttacagttttggatgcc
ccgggccataaaagttatgttcccaacatgataagtggtgcatctcaagctgatgttggt
gttttggtaatatctgctcggaaaggcgaatttgaaactgggtatgagaaaggtggacaa
actcgtgaacatgtccagcttgcaaagacattaggtgtttctaaattggttatcgttgtc
aacaaaatggacgatccaaccgtgagatggtcaaaagaaaggtttgatgaaatagagtcc
aagatggtaccttttctcaaatcctctggttataatgtaaagaaagatgttcagtttctt
cctatctctgctttgcttggtgcaaacatgaaaatcagaatggagaaaagcatttgtgat
tggtggtctggaccttgtctctttgaagtacttgatgctattgaaattcctcctcgagat
cctaaaggtcctgttaggatgccaattattgataaatacaaagacatgggaactgtagtg
atggggaaacttgagtcaggcagcatcaatgaaggagacaacttattcgtaatgccaaat
aaggctagtgttaaagtactttctataatctgtgatgaaaagaaagtcagacgagctgga
cctggtgagaatgtcaaagtgaaattggcaggtgttgaagaagaggatattttagctggc
tttgttctttcaagtgttgcaaagccaataggtgctttctatgaatttaatgctcagttg
cagattcttgagttgcttgacaatgcaatttttactgctggatacaaggcggtgttgcac
attcattcaattgttgaggagtgtgaggtcatagatcttcttgaggaaatcgatacaaaa
agaaggaaagaagaagatcctagaaagaaggccaaggccaagaggaagccactttttgtt
aagaatggtgctgttgttgtctgccgcattcaggttaccaacttaatatgtattgaaaac
ttttctgattttgctcaacttgggaggttcacgctccgtaccgaagggaaaacagtagca
gttgggaaagtagttgcacttccaccagcgggaagcgtcacatttgcatag
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