Zingiber officinale (ginger): 121995753
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Entry
121995753 CDS
T08725
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1-like isoform X1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121995753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121995753
03016 Transfer RNA biogenesis [BR:
zof03016
]
121995753
03029 Mitochondrial biogenesis [BR:
zof03029
]
121995753
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
121995753
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
121995753
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
121995753
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
121995753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POPLD
POP1_C
POP1_N
Motif
Other DBs
NCBI-GeneID:
121995753
NCBI-ProteinID:
XP_042405452
LinkDB
All DBs
Position
6A:complement(9564731..9572180)
Genome browser
AA seq
873 aa
AA seq
DB search
MTMDSKNANSVSISSAPPLPRTLNVHSFTESRAAELVSLHDIISTRLNGDFRIRRDKRRR
TTGHRTTNNHHRHSKRRKVQGDNVIHGEDGENDKKIKKVSRKTRRRMEFQDNPISGFGTS
GDGTKRLRTHLWHAKRFTMIKRWGFHLPQGLHGRGRGSRAVLRWCKNGALVHDSSYNIPI
QLEGAEGSILAILRMVLFPSPALPANAPEMQSRWVAQGDCCGNAMLYHFGAPISKLIAPV
IYMWSPLPTGNNNNSMGQHGNSNISGSSHKGECISSNRKLWIWIHAAAIDEGFDVLNNAC
QKQMHEFGSDVRCFKIEGQVARLDVMGSKATQMLEKILHPVSLSGATEANSMLNQSSNTA
CINSNDQKLVLLDHMENLPSHAILSLTTHDPRDLPSSGNEIQVNEHIPSLDNDFVQKDYP
NINEKFHSGSKSLWDFADNLFPPIPESILCKERHDKRLYNFYLEPSGSGEATEAKDDPRR
YCPLLLLKHSKHGSLHMGWSIILPLCWVKAFWVPLVSHGFHAIGLRERRWIACNSGLPSF
PFDFPDCQAYSSFMVDEAAAINKASERRPPAVRAMTVPIPPPWNCIATAFDRASELLPAL
RPLKGLIPRPCKFLSSTFVEGPDILRACQEQQCQTSSRVVSEEPIVGLDSKDTASSSMCQ
VAGSFSNVVPRTSEVLNWYFESIHSGDLHLLPKIHTGKNCTIDWAKSSTNSRDIDKKLCF
VRVLLHAYKEGVFEEGAMVCAPLSRDLSRWTSRSEEMDDQELKVPQSFVQSCFIEQGSGK
WEMLDPEECSTVPTFRWPIGFVTTGFVHGSSNPVAVAYCEARLLAALREQQSSVAQITDS
KILIFVRNMRSTAYRRAHAIIAIEDHNDDLEFL
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgactatggatagcaagaacgccaattccgtgtcgatttcctctgctcctcctcttcct
cgaaccctaaacgtgcacagtttcactgaatcccgagcagccgagctcgtttcgctccac
gacatcatatccacaaggttgaatggtgactttcgcatccgccgcgacaagaggagaaga
accaccgggcatcggactaccaacaaccaccaccgtcactctaagagaagaaaggtacag
ggcgacaatgtaatccatggcgaggacggggagaacgataaaaaaatcaagaaggtatcc
cggaaaactcgtcggagaatggagtttcaagataacccgatttctgggtttggcacctcg
ggggatggaacaaagaggctgagaacgcacctctggcatgccaagcgattcacaatgatc
aagcgttggggatttcaccttcctcaggggcttcatggcagaggaagaggttcaagggct
gttttaaggtggtgtaaaaatggtgcccttgtacatgattctagttataacattcccatc
caattagagggtgcagagggatctatattggcaatattacggatggttttattcccatca
cctgctttacctgcaaatgcaccagagatgcaatcaagatgggtagctcagggagattgc
tgtggaaatgctatgctttatcattttggagcaccaatttccaaactgatagctcctgta
atttacatgtggagccccttaccaactggtaacaataacaatagtatgggacaacatggt
aattcaaacatttctggaagctcacataaaggtgaatgcatttcttcaaatagaaaattg
tggatatggatacatgctgctgcaattgatgaaggatttgacgtactaaataatgcatgc
caaaagcagatgcatgagtttggttcagatgtcagatgttttaaaattgagggacaagtt
gcaaggttagatgttatgggatccaaggcaacacaaatgctagagaagattttacatccc
gtctccctttcaggtgcaactgaagccaattctatgttaaaccaatcatctaatactgct
tgtatcaactcaaatgatcagaaattggttctccttgatcatatggaaaaccttccatct
catgcaattctatctttaaccactcatgatccacgggatttgccatctagtggaaatgag
attcaagttaatgaacatatccccagcctcgataatgattttgtgcaaaaggattaccct
aatatcaatgaaaagtttcattctggttccaaaagtctctgggattttgccgataattta
ttcccacctattcctgaaagcattctttgcaaagagagacatgataagcgcttgtataac
ttctaccttgagccttctggtagtggagaagcaactgaagcaaaagatgatccacgccga
tactgccctcttttgcttcttaaacatagcaagcatgggagcctccatatggggtggtct
attattctaccactttgctgggttaaggctttctgggttccattggtctcacatgggttt
catgcgattggtttgagagaaagacggtggattgcctgtaatagtggcttaccatctttt
ccatttgattttcctgattgccaagcttactcgtctttcatggtggatgaagctgctgca
attaataaagcgtctgagcgccggcctcctgctgtgagagctatgacagtgccaataccc
cctccttggaactgcatagctactgcatttgatagagcatctgaactacttcctgctctc
agacctttaaaaggacttataccccgtccgtgtaaatttttatcctctacttttgtagaa
ggaccagacatactaagagcttgtcaggagcagcaatgccagacctcttccagagttgtt
tcagaagagccaattgtaggcttggactccaaagatacggcctcatcatctatgtgtcaa
gttgctggaagcttttcgaatgttgttcctaggacatctgaagttttgaactggtacttt
gaaagcatccatagtggagatttacatctgttacctaagattcatacagggaaaaattgt
acgattgactgggctaaaagcagtaccaattcaagagatattgacaaaaaactctgcttt
gtacgagttctgcttcatgcatacaaagagggtgtttttgaagaaggagcaatggtttgt
gcaccactttcaagagacctttcacgatggacatccagatcagaggaaatggacgaccaa
gagcttaaagtccctcaatcttttgtgcagtcctgcttcatagagcaaggatctggcaaa
tgggagatgcttgatcctgaagaatgctcaactgtgccaacatttaggtggcccatcgga
tttgttacaactggtttcgtacacgggagttccaatccggtagcggtggcttattgtgaa
gcgagactccttgcagccctgagagaacaacagtcatctgttgcccagataacagattcc
aaaatattgatatttgtccgaaatatgagatctacagcttataggcgtgctcatgccata
atcgctattgaagatcataacgatgacttggagtttttgtga
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