Zingiber officinale (ginger): 121995839
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Entry
121995839 CDS
T08725
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121995839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121995839
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121995839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
TPR_VPS8_2
Clathrin
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_CDC20-Fz
ANAPC4_WD40
WDR55
Beta-prop_HPS5
WD40
zf_RING_Vps8
WD40_Prp19
WD40_WDHD1_1st
zf-RING_Vps41
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
121995839
NCBI-ProteinID:
XP_042405548
LinkDB
All DBs
Position
6A:12415181..12429476
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AA seq
1965 aa
AA seq
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MTTKAPSSSSSTPRRGVPPMELDLDSFLRSHGGDLFSSSSDDDDDDHDEIDAVHRRTVDE
ILNDSDSSSSSSLSPPSRIPIPVPKTPIPTPDPKPKEEAALVEEASRRTRDSISEGAEEP
STSFDWRRRSRELSASVSLSSLGLRNGASSSSSSSRPLPSYFGGVRLNPKPGAALAAAAA
ASRSVPTPHAIAIKNRRAGIGSVWKDADEGLESAGSEGLDGSEHSGGTFLSENLESGVDE
EEILQSSAEATEEIHSEVDILEPSGPTPAQLETNVVAEELGVHFAAVESCQTPGQLEANE
DVLNLSETSQVPPVAVIPGEDFSMWNDNLPLTDGADVPHDMVNSNNQVELQVPPTVGDNV
NGDNVPNGGVREEREQVHSGSDIDKLVEERLSQAENSKRAEKKAEKKLRASMKPLEWAEE
LEKRHASSGLHWEEGAAAQPMRLQGIRRGPPAVGYLQIDLDNAITRSISSQQFKRDHGSP
QVVAVHLNYIAVGMSKGTIIVLASKYSAHSADSTDSKMLTFGSHAEKTQISVTSMCFNQQ
GDLLLAGYGNGHLTIWDVQKAIAAKVITGEHAVPVVHTLFLGQDPQVTRQFKAVTGDSRG
LVLLHTASVVPLLNRFSIKTQCLLDGQKTGTVLCASPLQLYDMHGFVSAPSQIHSSASSN
GLSSMVGGVVGGVVGGESGWKLFNEGSPVVEEGVVIFVTHQNALVVRLSPNVEVFDKFPR
PEGVREGSMPYAEWKWTLADDSSLDSSDKVSWLAIAWDRNVQVAQLVKSEMKKYREWNLD
SAAIGIAWLDDKMLVVVTLRGQLCLFTKDGNEIHRISFIVSGLGIDDVITYNTFFSNTFG
NPEKGFHNSIAVRGATVYILGPMHLIVSRLLPWREKIQVLQRAGDWMGALDMSMRLYDGH
AQGVIDLPRTVVAIREVIMPFLVELILSYVDEVFSYISVAFCNQIEKAGLVEDIKSSDST
LQKEIEDQYARVGGVAVEFCIHISRIDILFDSIFTKFVAVQHGGTFLEILEPYILKDMLG
SLPPEIMQALVEHYSSRGWLQRVEQCVLHMNISSLDFNQVVRLCREHGLYGALIYLFNRG
LDDYRTPLEELICVVKDSSRTDAASIGYRMLVYLKYCFQGLAFPPGHGTISSQRLQSVRE
ELLSFLLEDSKSLTSPVFKSFKASCGICPNLCYLLWLATEATLKVIRCAFLEEGCTQIVD
SMHYKVESNAEDGKEEDFHRIKVQNAMVQSIANTLIDILDLKSVVIKSFVIEDTAEVWPS
KEDLGQILEFIAFLVSYKQATISEKVLKHILRHLTSQDKTSDDPNMKYEVSRPEKQVLTL
LKVAPQVDWNSDDVMHLCVYAHFYQACGLIHEIRGQFVDALDSYMKDQDEPIHAFAFINK
IMLQLKNNNVSFKMAVISRIPELIKLSRECAFFLVIDQFSSETQDILSELRSHPQSMFLF
LKTTLEIHLSGNLKFPVLETVCLSNPPFGEIRETPNNLEEYAERLASFPKLLHQNTIQVN
DELTELFLSLLCQFERNSVLKFLETFDNYRLEQCLHICQEYGVTDAAAFLLERVGDVGSA
LMLMLTGLNEKIDLLVDAVEKKIYEVASSDSLWQFEDIMNLNEVISVTDVLHASISLCQR
NTRRLDTTESESLWFRLLDFYSQPMKWLCAIKPASLNQKHGNPDHLNVLEPMPKWKISHK
ASATILRKLFSQFVGELIEGMAGYMPLPVIMAKLLSDNGNQEFGDFKLTILQMLGTYGYE
RKILGTAKSLIEDDTFYSLSLLKKGASHAYAPQDFICCICGCTFTKGSTSGIRVFSCGHT
THLQCEFEESKKSESVRCPICLPKKNPRPRNKSFFLENGLVKGSTSSSQPSESIFSVQHV
HESEVMEKPFGLQQISRFEILNNLQKNGKFLRTEALPQLKLSPPAIYHEKIQQRSISVVG
EPSDSAQKIDKPSKLWQLKDLKSRGSLNMFPLRSNIFGPEKNKVR
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgaaggctccctcatcatcgtcgtcgacgcctcggcgaggagttcctcccatg
gagctcgatctcgattccttcctcagatcccacggcggtgacctcttctcctcctccagc
gacgacgatgacgacgaccacgacgaaattgacgcagttcaccgtcggaccgtcgacgag
attctcaacgattccgattcctcctcttcttcctccctctcccctccttcccggatccca
attcccgtccccaagaccccaattccaacccctgatcccaagcctaaggaggaagctgct
cttgttgaggaagcttcgagacgaactcgagattcgatttccgaaggcgcagaggaacca
tcaacgtcgttcgattggagacggcgatctcgcgagctttctgcttccgtttccctctct
tccttagggctgaggaatggtgcatcttcctcgtcttcttcgtctcgtccgcttccctct
tactttggtggtgtcaggcttaaccctaagcctggtgctgctcttgctgctgcggccgcg
gcctcccgcagtgtcccgacgcctcatgcgatagctattaagaataggagggcaggcatt
ggctctgtctggaaagatgcggatgaaggactggagagtgctggttcggaaggactggat
ggatcagagcattccggaggtacctttcttagtgaaaacttggaatctggggtggatgaa
gaggaaattttgcagtcatcagctgaagcaactgaggaaatccatagtgaggttgatata
ttggaaccatctggcccaacacctgcgcaattggaaactaatgtagtagcagaggaacta
ggtgttcattttgctgcagtagaatcttgccaaacccctggacaattggaagctaacgaa
gatgttctcaatctgtcggagactagccaggtaccgccagttgctgtgattcctggtgaa
gatttttcgatgtggaatgataatttgccactgacagacggtgctgatgtcccccatgac
atggttaactctaataatcaagtggaactgcaagttccacctactgttggagataacgtc
aatggggacaacgttcctaatggaggcgtaagagaggagagagaacaagttcatagtggg
agtgacattgataaattagtagaggagcgattgtctcaggcagagaacagtaagagagct
gagaagaaggctgagaaaaagctccgtgcctctatgaagcctcttgaatgggccgaggag
cttgaaaagcggcatgcatcatctggtttacactgggaggaaggggctgctgctcagcca
atgagactacagggcatccgaaggggaccacctgctgttggatacttgcaaatagatctt
gacaatgcaatcactcgttctatttcttcacaacaattcaagcgtgaccatggttccccg
caagtggttgcagttcacttgaattatatagctgtaggcatgtctaaaggaaccattata
gttttagctagcaaatactctgctcactctgctgacagtacagattccaagatgctaacg
tttggttctcatgctgagaaaactcagatatctgtaacgtcaatgtgctttaatcagcaa
ggtgatttactattagctggatatggtaatggtcatttaacaatttgggatgtacagaaa
gcaatagcagcaaaagttatcactggagagcatgcagtgccagttgtccatacactgttt
ttaggacaagatccacaagtcactcgccagtttaaagctgttactggcgattctaggggg
cttgttttattacatacagcttctgttgttcctctgctcaatcgtttctctatcaagaca
caatgtctacttgatggccaaaaaactggaacagtgctgtgtgcttccccccttcaattg
tatgatatgcatggatttgtatctgcaccttctcaaattcattcatcagcatcctccaat
ggccttagcagcatggttggaggtgttgttggaggtgtagttggaggggagagtggatgg
aagctcttcaatgaaggttctccagtggtggaagaaggtgtggtcatatttgtcacccat
caaaatgctttggtggtaagactaagtccgaatgtagaggtgttcgataaatttcctaga
ccagagggtgttcgtgaagggtccatgccttatgctgaatggaaatggacattggcagat
gactcatcactagattcttctgataaagtttcatggcttgcaattgcatgggaccgaaat
gtccaagtggcccagttggtaaaatcagagatgaaaaaatacagggagtggaaccttgat
agtgctgccataggcattgcatggttagatgataagatgctagtggttgttacacttaga
ggacaactttgcttgtttacgaaagatggaaatgagattcatcgtataagttttattgta
agcggattgggaattgatgatgtaataacttataacacatttttttctaacacctttgga
aatccagagaagggttttcacaattctatagcagtaagaggagctacagtatacatatta
gggccaatgcatcttatagtttcacgtctacttccttggagagagaagattcaagtactg
cagagagcaggtgattggatgggtgcacttgatatgtcaatgaggctttatgatggccat
gcccagggtgtaattgatcttccaagaacagttgttgctataagggaggttataatgcca
tttcttgtggagttaattttatcatacgtggatgaagttttctcatatatttcagttgca
ttttgcaaccaaattgaaaaagccggtctagtggaagatataaagtcatcagacagtacc
cttcagaaagagatagaggatcagtatgctcgtgttggtggtgtagctgtggagttttgc
atacacataagtaggattgacatcttattcgatagtatcttcactaaatttgttgctgtt
cagcatggaggcacatttttggagatcttggagccatacattctgaaagacatgcttgga
tctttaccaccagagatcatgcaagccctagtagagcactatagtagcagaggatggttg
caacgtgttgaacaatgcgtccttcacatgaatatttcttctctggactttaatcaagtt
gtaagattatgtcgtgaacatggtctttatggtgcactgatatatcttttcaatcgaggt
ttagatgactacaggacaccattagaggaacttatatgtgttgtaaaagatagttcaaga
acagacgctgcttctattgggtaccggatgcttgtttatctaaagtattgttttcagggt
ttagcattcccccctggtcatggtacaatatcatctcaacgtttgcaatcagtgagagaa
gaattattaagttttttgttggaggactcaaaatcattaacctctccagtcttcaaaagc
ttcaaggcatcctgtggaatttgcccaaatctatgttatctcctttggttggctactgaa
gcaacccttaaagtcatacgatgtgcttttttagaagaggggtgcactcagatagttgat
tctatgcattataaagttgagagtaatgctgaagacggaaaggaagaggattttcatcgc
ataaaagttcaaaatgcaatggtacagagtattgcaaacacactaatagatattcttgat
ttgaagtcagtggtgataaaatcatttgtaatagaggacactgctgaagtttggccttca
aaggaggatttgggtcaaatacttgagttcatcgcatttcttgtttcctataagcaagct
actatttcagaaaaggtgctaaaacatattcttagacatttgacatcacaggataagaca
tcagatgatcccaatatgaagtatgaagtttctcgaccagagaaacaggtgctcactttg
cttaaagttgcccctcaggtggactggaattctgatgatgtcatgcatctatgcgtatat
gcccatttttatcaggcttgtggcttaatacatgagatcagaggtcaatttgttgatgct
ttagatagttacatgaaggatcaagatgagccaatccatgcttttgctttcattaacaag
attatgttacagctgaaaaataataatgtttcttttaagatggctgtaatttctcgaatt
ccagaacttatcaagctaagcagagaatgcgcgttcttcttggtcattgatcaatttagt
agtgaaactcaggatatcttatcagaattgcgttctcatccacaaagcatgttcctcttc
ttaaaaacaacccttgaaatccatttgtcaggaaaccttaaatttcctgtgcttgaaaca
gtttgtctctcaaacccaccatttggtgagatcagggagacaccaaataatcttgaagaa
tatgctgaacgactagcaagtttcccaaagcttttgcatcagaacacaattcaagtaaat
gatgaactgacagaactgtttttatcgcttttatgccagtttgagcgcaactcagtcttg
aaatttctagaaaccttcgacaattatagacttgagcagtgtctccatatttgtcaagaa
tatggtgtcactgacgctgctgcatttttactagaaagggttggtgatgttggtagtgct
ctaatgcttatgttgactgggcttaatgaaaagatcgatttgcttgttgatgctgtggaa
aagaaaatttatgaggtggcatcaagtgattctttatggcagtttgaagatattatgaac
ctaaatgaggttatctctgtgactgatgtgttgcatgcttccattagcctatgccaaaga
aatactcggcgtttagacactacagaatctgagtcgctttggtttcggttgcttgacttc
tattctcagccaatgaagtggctctgtgccatcaaaccagcttctttgaatcagaaacat
ggcaatccagatcacctgaatgtcttggagcccatgcctaaatggaagatttcgcataaa
gcttctgctactattttgagaaagctgttctcacaatttgtcggggagttaattgaaggg
atggctggatatatgccccttccagttataatggccaaacttctttctgacaatggcaat
caagaatttggtgattttaagttgactatcttgcaaatgcttggaacttatggttacgag
agaaaaattctgggaacagctaaatcattaattgaggatgataccttttatagcttaagc
ttgctgaaaaaaggtgcctctcatgcttatgcccctcaagatttcatttgctgcatttgc
ggatgcacatttaccaaaggttcaacttctggaattagagtttttagctgtgggcataca
actcatctgcaatgtgaattcgaggaaagcaaaaaaagtgagtcagttagatgcccaatt
tgcctaccaaaaaaaaatccccgtccacgaaacaaatcatttttcctggagaatggccta
gtaaaaggctctacttctagctcgcaaccatcagagtccatctttagtgttcaacatgtt
catgaatcagaagttatggagaaaccttttggccttcagcaaatctctcggtttgaaatt
ctgaataatctccagaagaatggtaaattccttaggacagaagctctgcctcagctaaag
ctctcgcctccagctatctaccatgagaagatccagcaaagatccatttctgtggtggga
gaacctagtgattccgcacaaaaaattgacaagccaagcaaactatggcagcttaaggac
ctaaaatcaagggggtcactgaacatgttccccttgaggtccaacatatttggtcctgag
aagaacaaagtgcgataa
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integrated database retrieval system
