Zingiber officinale (ginger): 121995853
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Entry
121995853 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121995853
09124 Replication and repair
03420 Nucleotide excision repair
121995853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121995853
03400 DNA repair and recombination proteins [BR:
zof03400
]
121995853
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121995853
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121995853
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121995853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
121995853
NCBI-ProteinID:
XP_042405561
LinkDB
All DBs
Position
6A:complement(12793112..12802324)
Genome browser
AA seq
1184 aa
AA seq
DB search
MEDDYAMMDNDDDDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDI
EIRPESQHNPGRQSDFVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAP
LYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVR
MLSRASAKGGSSGQYIRATLPYIRADIPIIIIFRALGFVADKDILEHICYEFSDSQMMEL
LRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETK
KAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSH
LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPI
LEFLDEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPEMLVKTLRQLRRQIDVNTEVG
VIRDIPLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEEGWHDLVAKGFI
EYIDTEEEETTMISMTINDLVNARQNPEEAYCDTYTHCEIHPSLILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGQPNRDNTM
GMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDSQGQASRYTRRDHSTSLRHSE
SGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
MRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLVAIANLKKSSFECRGCK
NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgactatgcaatgatggacaacgacgatgacgacgatatcacccaggaggac
gcctgggcggtgatcagcgcctacttcgaggagaagggtcttgtgcggcagcagctggac
tccttcgacgagttcatccagaacactatgcaggagatcgtggatgagtcctcggacatt
gagatccgccccgagtcccagcataacccgggccgccagtctgacttcgtcgagactatt
tataagataagcttcgggcagatatatttgagcaggcctatgatgacagagtctgatggt
gaaactgctacattattcccaaaagcagcaagattgaggaacttgacttattctgctcca
ttgtatgttgacgtcactaaaagaattataaagaagggtcatgattgtgaagaagtgaca
gagactcaagattttgcaaaagtgtttatcggaaaggtgcctataatgctccggtccagt
tattgcactttgtatcagaactctgagaaggatctcactgaacttggggagtgtccttat
gatcaaggaggatatttcatcatcaatggaagtgaaaaggtgcttattgcacaggaaaag
atgagcaccaatcatgtatatgtatttaagaaaaggcagccaaacaagtttgcttatgta
gctgaagttaggtctatggctgagaaccaaaacaggccagcaagcagcatgtttgtccgc
atgctttctcgtgcaagtgcaaaagggggttcatctggacaatacattcgagctactctc
ccctatatccgagctgatatccctataataattatcttccgggcattaggttttgttgct
gataaggatatactcgaacacatatgctatgaattttctgattctcaaatgatggaattg
ctgagaccctccctcgaggaagcatttgttattcagaaccaacaggtggcactggactat
attggtaaaagaggagcaacagttggtgtcacaagggacaagcggatcaaatatgccaaa
gaaattcttcaaaaagaaatgttgcctcatgttggtgttggtgaatactgtgaaacaaaa
aaagcctattactttggatatatcattcatcgtctattgttgtgcgcccttggacgaaga
ccagaagatgatagggatcactatggcaacaaaaggctggatcttgctggtcctctgctt
ggtggcttgttccgaatgctctttagaaaattgacaagggatgtgagatcctatgttcaa
aagtgtgttgacaatggaaaggatgtgaacttgcaatttgcaatcaaagctaagactatt
actagtggtctaaagtactcccttgcaactggaaattggggacaggctaatcaagctggt
actagggcaggcgtttcacaggtgttgaatcgattgacatatgcatccacactatctcac
ctacggaggttaaattctcccataggacgtgaagggaaactagcaaagcctcgtcagttg
cataattctcattggggcatgatgtgtcctgctgaaacacctgaaggacaggcttgtggc
cttgtcaagaatctagcattaatggtgtacataacagtaggatctgctgcaaatccaata
ttggagtttttagacgagtggagtactgagaactttgaggaaatctctccggctgttatt
ccacagtcaacaaaaatttttgtcaatggctgttgggttgggattcacagaaacccagag
atgttggttaaaaccttaagacaattgaggagacagattgatgtcaacactgaggtggga
gtcatacgggacattccgctgaaagaattgcgcctttatactgactatggtcgctgcagt
cgtccactttttattgttgaaaagcaaaggcttttgattaagaaaaaggacattcgagca
ctgcaacagagggaaactcctgaggaaggttggcatgaccttgttgctaaaggattcatt
gaatacatagacactgaggaagaagaaactaccatgatttcaatgacaatcaatgatctt
gtgaatgcaaggcagaatcctgaggaggcttattgtgatacttacactcattgcgagatc
catccttcgttgatattgggtgtttgtgcatccatcattccctttcccgaccacaatcaa
tctcctcgtaatacatatcaatcagcaatgggtaaacaagccatgggaatatacgtcaca
aattatcaattaagaatggacacactagcttatgttctgtactaccctcagaagccactc
gttacaactcgtgctatggaacatttacactttagacaactcccagctggcattaatgct
attgtcgccatttcctgttattctgggtataaccaagaagattctgtcatcatgaaccaa
tcttcgatagatcgtgggttcttcagatccttattcttccgttcctacagagatgaggaa
aagaaaatgggaactcttgttaaggaggattttgggcaaccaaatagggacaacactatg
ggcatgcgtcatggttcctatgaaaaattggatgatgatggtcttgcacctcctggtaca
agggtctcaggtgaagatgttataattgggaagacaagccccattgctcaagacgattca
caaggacaagcttcaagatacacccgacgagaccatagtactagtttacggcacagtgag
agtgggatggtggatcaggttttgttaactacaaatgcagatgggttgaggtttgtgaaa
gtgagggtgcgatctgtgcggataccacaaatcggagacaaatttagtagcagacatggt
cagaagggaactgttggtatgacatacacgcaggaagatatgccatggacagtcgaaggc
attacccctgacattattgtgaacccgcatgctataccttctcgaatgaccatcggtcag
ctgattgaatgtatcatgggtaaagttgctgctcatatgggaaaggagggtgatgctacg
ccattcactgatgtcactgttgacaatatcagcaaggctcttcacaagtgtggttatcaa
atgcgtggttttgaaaccatgtataatggtcatacaggacgaaggctgcctgccatgata
ttccttggtcctacctattaccagagattgaaacacatggtcgacgacaagatccattct
cgagggcgtggacctgtgcaaattctgacaaggcagcctgcggaaggacgttctcgagat
ggtggcctcaggttcggagagatggagcgagactgcatgattgcccatggtgctgcacac
ttcctcaaggaacgactatttgaccaaagtgatgcatacagggttcatgtgtgtgagaaa
tgtgggctcgtagccattgccaatctcaagaagagttcctttgaatgcagagggtgtaag
aacaaaaccgacattgttcaagtacacataccatatgcgtgcaagcttctattccaagaa
ctgatggccatggctatcgcaccaaggatgctcaccaaagaacagcagctagctaaagat
caaaagaagaaatga
DBGET
integrated database retrieval system
