Zingiber officinale (ginger): 121996052
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Entry
121996052 CDS
T08725
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80-like
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121996052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121996052
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
121996052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
121996052
NCBI-ProteinID:
XP_042405797
LinkDB
All DBs
Position
6A:complement(20040459..20051905)
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AA seq
690 aa
AA seq
DB search
MARNKEAMIFLIDVGPSMHSVLPEVGKVCSMFIQKKLIFAKSDLVGIVLFGTKDTNNELE
KEVGGYEHVFVLRDIGVVDEADLETLNLPRGTFPGDFLDAIVVGMDMLIKKFNPKEKLKK
CLHLITNAQCATKEPYEGTKVDQAVTIAHQMNAQGISLNCLIFRERLWGVENQQVIDEND
KLLNQFSQQAVANIVHVDSTTSLLGAIKTRRINPVTIFRGDLELSSTMKIKVWVYKKTAE
EKFPTLKKYSDEAPTSDKYATHEVKVDFEYKIMEDPDKIVPPEQRIKGYRYGPQVVPISA
SEWEAAKVKLKKSVKLLGFTKASNISRHYYMKDVNIFIPEPGNTKAIIAVSALARAMQEK
NRSAILRCVWREGQGKVIVGVLTPNLSSVDKIPDSFYFNVLPFAEDVREFQFPSLSKFSS
CQPDEKQQEAADDFVKMLDLTSSNGKELLQPEYTPNPVLAQFYRFLDLKSKDPGSDIPEL
DNSLKKIAEPDFDILSRNKSITNHFEKQFELKENSKKRKLSRHAWRGKPSVSDEKEVGKE
GEVPETQSASLVKALPSTNVEKIGDLNPVQDFEAMMKRRDSSKWTSKAIKDMKSHIFYLL
ENSFEGHSYQKAIECLIALREGCILEQEPREFNDFLLDMCKKWSKTDLADFLSLMPSKNI
TLISKIEAADSDLTEAAAKNFPVTFNESPE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtaacaaggaagcgatgatttttctgattgatgttggtccgtcgatgcatagc
gtccttccggaggttggaaaagtttgttcaatgttcatacagaagaagttgatttttgct
aaaagtgatctggttggaatagttctatttggaactaaagatactaacaatgagcttgag
aaggaagttggtggatatgaacacgtgtttgttttacgtgatattggagttgtggatgaa
gctgatctggaaactttaaatcttcctagagggacattccctggagactttttggatgcc
attgtggttggtatggatatgctgataaagaaatttaatcccaaggaaaaactaaaaaaa
tgtcttcatctcatcacaaatgcacaatgtgctactaaggaaccttatgaagggacgaaa
gtggatcaggcagtaactattgctcatcagatgaatgctcaaggcataagcctgaactgc
ctaattttcagagaaagattatggggtgttgaaaatcagcaggtcattgatgagaatgac
aaactcctcaatcaattctcacagcaagcagtggccaatattgtgcatgttgatagtacg
acatctttgttaggtgctattaagacacggagaataaatcctgtcacaatattcagagga
gatttggaactcagttcgacaatgaagattaaggtctgggtatataaaaagacagctgag
gagaaatttcctacattgaaaaagtattctgatgaagcacctacaagtgacaaatatgca
acacatgaggttaaagtggattttgaatataaaataatggaggatcctgataaaattgtt
cccccagagcaaagaattaaaggctatcgttatggccctcaagttgttcctatatcagct
tctgaatgggaagcagccaaagtcaaacttaaaaagagtgtgaagcttttaggatttacc
aaggcttcaaatatatcacggcactattatatgaaggatgtcaatatctttattccggag
ccagggaatacaaaggcgattattgcagtttcagctttggctagagcaatgcaggagaaa
aacaggtctgcaattttgcgttgtgtatggagagaaggtcaaggaaaagttattgttggg
gttctaacacccaatttgtcatccgtggataagataccagattcattttacttcaatgtg
cttccttttgctgaagatgttcgagaatttcaatttccttcacttagcaagttctcatca
tgtcaaccagatgagaaacaacaagaagcagcagatgactttgttaagatgttggatctt
acatcttctaacggaaaagaattgcttcagcctgaatatactccaaatccagttttggcg
caattttatcgctttcttgatttaaaatcaaaggatccagggtcggacatacctgaactt
gataatagtcttaagaaaatagctgaacccgactttgacattctttcaagaaacaagtcc
attactaaccattttgagaagcagtttgaactgaaggagaattcaaagaagaggaagtta
tctagacatgcgtggaggggaaaaccatctgtttcagatgaaaaggaagttggtaaggaa
ggtgaggttcctgagactcagagtgctagtctggtaaaggccttgccttcaacaaatgta
gaaaagattggtgatttgaacccggtgcaagattttgaagctatgatgaaacgtagagac
agttcaaaatggactagtaaagcaatcaaagatatgaaaagtcatattttttacttgtta
gaaaattcttttgaagggcattcctaccaaaaggccattgaatgtttgatagctcttcgt
gaaggatgtattcttgaacaggaaccaagggaattcaatgattttttgcttgatatgtgc
aagaaatggagcaaaactgacctggctgactttctttcccttatgccatcaaagaacatc
accttgatcagcaaaattgaagccgcagacagtgacctaacagaagcagcagcgaaaaac
ttcccagttactttcaatgagtctccagagtaa
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