Zingiber officinale (ginger): 121996163
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Entry
121996163 CDS
T08725
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121996163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121996163
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996163
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121996163
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121996163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_12
zf-CCCH_RBM22
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121996163
NCBI-ProteinID:
XP_042405945
LinkDB
All DBs
Position
6A:complement(25694779..25702609)
Genome browser
AA seq
700 aa
AA seq
DB search
MDDPDGALSFDFEGGLDSAAPASVAPAAAAGHLTAPDPTAAAANAGVAPPIGPADQIGGA
AGNGHGRRSFRQTVCRHWLRGLCMKGEACGFLHQYDKERMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHLKMPGPPPPIEEVFQKIQHLSSFGYGSSSNRFY
QHRSNNYNQQPDKNHLSSASGLANATVKLIPLDSSDAKAPESLVQQPQQQQEQQQQQQQQ
PPPPPPAAATENQAPGTSNGLSNQPIRTASLLPQGQSRYFIVKSCNRENLEISVQQGVWA
TQRSNEAKLNEAFESTENVILIFSINKTRHFQGCAKMTSRIGGYIGGGNWKYSHGTAHYG
RNFSLKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGDQLASLLYLEPDSEL
MAMLAAAESKREEEKAKGVGIEEARENPDIVLFEDNEEEEEDESEEEDDNSNQATQGRGR
GRGMMWQPQIPFVRGGRPMLGVRGFPPMMMGADGFGFGDGFSTPDMYGPRIFPPFGGPRF
AGDFSGGMVFPGRPLQPGAVFPMGNLGMMMGPGRPPFMGGMPMGGIGRANRPVGVPPFLH
PPLSNNRAAKRDHRRPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYT
AGRSFQNDESESEDEMAPRRSRHSDGKRKHGGSEGEAALN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcccgatggagccctcagcttcgactttgagggcggtcttgactctgccgct
cctgcctccgtcgctccggcggcggccgctggacatctgacggcaccagatcctacggcc
gccgctgcaaacgcgggagtcgctccgcctatcggaccggccgatcagatcggtggcgca
gctggaaatgggcacgggaggcggagcttccggcagactgtctgccggcactggctccgt
ggcttgtgtatgaagggagaggcgtgtggattcctgcaccagtacgacaaggagcggatg
ccggtatgccgcttcttccgcctttacggggagtgtcgcgagcaggactgcgtttacaag
cacacgaatgaagacatcaaggagtgtaatatgtataaacttggtttctgccccaatgga
cctgattgtcgataccgacatttaaagatgcctgggccaccgcctcccattgaagaggtc
ttccagaagatacaacatctgagttcttttggttatggatcttcttcaaacagattttat
cagcacaggagcaacaattataaccaacagccagataagaatcacttgtcatctgctagt
gggttagctaatgcaacggttaaactgattccactggattcgtcagatgcaaaggcacca
gaatccctggtacaacagcctcagcagcaacaggaacagcagcagcagcaacagcagcag
ccaccacctccgcccccagcagcagcaacagagaatcaagccccgggtacttcgaatggc
ttgtcaaatcaacctattagaactgcatctctactccctcagggacaatctaggtatttt
attgtcaaaagttgcaatcgagaaaatctggaaatatctgttcagcagggtgtttgggca
actcaaagaagtaatgaggctaaacttaatgaggcatttgaatctacagaaaatgttatt
ttgatattttcaatcaataaaactcgccattttcagggatgtgctaagatgacttctagg
attggtggttatattggtggagggaattggaaatattctcatggaaccgcacattatggc
cgaaacttttcacttaaatggctaaagctatgtgaattgtccttcaataaaactcatcat
ctcaggaatccatataatgacaacctcccggtgaagattagtcgggactgccaagagctg
gaaccttttattggagaccagttggcctcgctgctttatctggagcctgatagtgaactg
atggcaatgctggcggctgcagagtccaagcgggaagaggaaaaggccaagggagttggc
atcgaggaggcgagagaaaatcctgacattgtcctcttcgaggacaatgaggaggaggaa
gaggacgaaagtgaggaagaagatgataacagcaaccaagctacacaagggagaggaaga
ggaagagggatgatgtggcagccacagattccatttgtacgcggaggaaggcctatgctt
ggcgtacgaggtttccctccaatgatgatgggggctgatggatttggtttcggtgatggc
ttctctacaccagacatgtatggtcctcgtattttcccaccatttggaggccctcggttt
gctggtgatttttcaggaggcatggtcttccctggcagacccctgcagccaggggcagtt
ttcccaatgggcaacctaggaatgatgatgggtcctggtcgaccaccatttatgggtggc
atgccaatgggtgggattggtcgagctaatcgtcctgtgggagttccaccatttctacat
cctcctttgtcgaataaccgagctgcaaagagggaccacaggagaccagccaatgataga
tatgagagtggatctgatcagggcaacaggggccaggagatggttggaactcccagtgga
gtagatgatgatgcagggtattggcaaggtggcgataaggcttctgatgacaaatacact
gcagggagaagtttccaaaatgatgagagcgagagtgaggatgagatggcaccaaggcga
tctagacatagcgatggcaagagaaagcatggcggatctgagggggaagctgcattaaac
tag
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