Zingiber officinale (ginger): 121996246
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Entry
121996246 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121996246
09123 Folding, sorting and degradation
03018 RNA degradation
121996246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996246
03041 Spliceosome [BR:
zof03041
]
121996246
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121996246
mRNA cycle factors
Stress granule specific factors
121996246
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
121996246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_10
RRM_occluded
RBD_DEAH11
RRM_YTH1
RRM_PARP14_3
Glyco_hydro_12
DUF5062
Motif
Other DBs
NCBI-GeneID:
121996246
NCBI-ProteinID:
XP_042406083
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All DBs
Position
6A:33195247..33199701
Genome browser
AA seq
396 aa
AA seq
DB search
MAQALVDQHPANGVVNGAGGNPPPLASLFVGDLQPNVTETQLFELFRQIGPVVSVRLCLD
SRTNRSLGHAYVNYSNPTDAAMALDVLNFTPIHNRPIRIMYSIHDPSISINGAANIFIKN
LDKTIGNKELHEIFCSFGNILSCKVAIDAFGQSKGYGFVQFEQEEAAQNAINRLNGMLVN
DKLVYVGPFIHKQERESSADKTKFCNVFVKNLSESTTKEDLEFIFGKYGEITSAVVMTSE
DGKSKCFGFVNFEMPDAAAQAVHELNGQKFDDEWYVGKALKKSERELDLRGNFHLHAREA
FNKHQGINLYLKNFEDNIEDDMLRELFSGFGTITSCKIMREPNGASKGFGFVSFSAPEEA
ARALAEMNGKLIGGKPLFVALAQDKAERKAKLQVFN
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggctttggtcgatcagcatccggcgaacggggtggtcaacggcgccggcggg
aatccgcctcctttggcgtcgctcttcgtgggggacttgcagccaaatgtgacggagacg
caattatttgaacttttcagacagatcggacctgtcgtgtcggtgcgcctctgcctggac
tcgaggacgaaccgctctctcggccatgcctatgttaactacagcaaccccacggacgct
gcaatggctttggatgtgctgaacttcactcctattcataataggcccattcgtattatg
tattcgatacatgatcctagcattagtataaatggggctgcaaatatttttatcaagaat
ctagataaaacaataggaaacaaagaactacatgagatcttctgttcttttggtaatatc
ttgtcctgcaaggtagctatagatgcatttggccagtcaaaaggctatggttttgttcaa
tttgaacaagaagaggctgcacaaaatgccattaacaggctaaatggcatgcttgtgaat
gataaactggtttatgttggacccttcatacacaagcaagaaagggaaagctctgcagac
aagaccaaattttgtaatgtctttgtcaaaaacctttcagaatccactacaaaggaggac
ctggaatttatctttggaaaatatggggaaatcactagtgcagttgtgatgacttcggag
gatggaaaatctaagtgctttggatttgtcaattttgagatgccagatgctgctgcccaa
gcagttcacgaacttaatgggcagaaatttgatgatgagtggtatgttggaaaggcactg
aaaaaatctgaaagggaattagatttaaggggaaattttcacctacatgccagggaggca
ttcaataagcatcaagggattaacttatatttgaagaactttgaagacaatattgaagat
gatatgctgagagaattattttctgggtttgggacaataacttcttgtaagattatgcgg
gagccaaatggtgcaagtaaaggctttggctttgtttctttctcagctcctgaagaagca
gctcgagctctggcagagatgaatggaaaattaattggtgggaagccacttttcgtagca
cttgcacaagacaaagcagaaagaaaagctaagttgcaggtattcaattag
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