Zingiber officinale (ginger): 121996250
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Entry
121996250 CDS
T08725
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13-like isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121996250
Enzymes [BR:
zof01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
121996250
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
121996250
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Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
Methyltransf_25
Motif
Other DBs
NCBI-GeneID:
121996250
NCBI-ProteinID:
XP_042406087
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Position
6A:complement(33478316..33492148)
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AA seq
471 aa
AA seq
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MVATTVTQFVTRAPPLVGEAEEREESAASPDRCQFWLPNKRRLCANTPLPSSRFCGNHDP
DAGARRIPCPIDPSHSVSEDNLQSHVKKCPFRKQALALESQPYYSKGINGSPDDDYVDSA
AKRNTILQLSVKDFQTLLEKVKSIHSAISVVLLDSYVIPDACSAWLKQQHLDRKLPYQEK
HAMQQASIVGNIEATGILQKPNESAEPFYQEIVGRDRFGRDESQIPAVVEFGAGRGYLTQ
MLTDCYGLSKVCLIERKSYKLKADRSLRQSQNIILERLRIDIEDLNLKEVNLLKGLQYIA
IGKHLCGPATDLTISCCLSGQGEQNKETHSTILNLQGLALATCCHHLCQWKHYANTKFLL
SLGITKEEFHAMTWFTSWAVDADHSSELADMPFNATNISTIKEKQSDVLGGSVDDAIRSI
PTLDRARLGFMCKEIIDTGRLFWLREHGMEAQLVKYVPLSISPENHLLIAK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggttgccacaaccgtgactcaattcgtcacccgggcgccgccgctggtcggtgaagcg
gaggaaagagaggaatcggcggcctcgccggaccgatgccagttctggctccccaacaag
cgccgcctctgcgccaacactcccctcccgtcctcccgattctgcggaaaccatgatccc
gatgctggtgctcgccggatcccctgcccgatcgacccatcccactccgtgtcggaagac
aatctgcaatcccatgttaagaaatgccctttcaggaagcaagcgctagctttggagagc
caaccatactactccaagggaataaatgggagcccggatgacgattatgtggactcagct
gcaaagagaaatacaatccttcaactttcggtgaaggatttccaaactcttcttgagaag
gtcaagtcaattcattcagccatttcggtggttttgttggattcatatgtaattcccgat
gcctgcagtgcatggctgaagcagcagcatctggataggaaattgccataccaagagaag
cacgccatgcaacaagcatcaatcgttgggaacatagaggcaacgggaatccttcagaaa
ccaaatgagtctgcagaaccattttatcaagaaatcgtgggaagagatcgttttggtagg
gatgagagtcaaatcccagctgtggtggagtttggagctggcagaggttatttaactcag
atgcttacagattgttatgggcttagcaaagtttgtctgatcgagagaaagtcttacaaa
ctcaaggctgatcgaagtctgcgacaaagccaaaacattattttagaacgtttgagaatt
gacatagaagatttgaacctcaaagaggtgaacttattgaaaggacttcaatacatagcc
atcgggaaacatctatgtgggcctgcaacagatcttaccataagttgttgtctcagtgga
caaggtgagcaaaataaggaaacacattcaactattctaaatttgcaaggactcgctcta
gcaacatgctgtcaccatctttgccaatggaagcattatgcaaatacaaaatttctcctt
tctctgggcattacaaaggaagaattccatgccatgacatggtttactagttgggctgtc
gatgcagatcatagctccgagcttgctgatatgccgtttaatgccacaaatatcagcact
atcaaggaaaagcaatccgacgtgctgggtggcagcgtcgatgatgcaatacgaagtata
ccaacactagatagggctcgtttgggcttcatgtgcaaggagattatcgacactgggagg
ttattttggctgagagaacatggaatggaggcacaacttgtgaaatatgtcccattgagt
atctcgccagaaaaccatctgctaattgcgaaatga
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