Zingiber officinale (ginger): 121996302
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Entry
121996302 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121996302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996302
03041 Spliceosome [BR:
zof03041
]
121996302
03009 Ribosome biogenesis [BR:
zof03009
]
121996302
03016 Transfer RNA biogenesis [BR:
zof03016
]
121996302
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121996302
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121996302
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121996302
Complex C
U4/U6.U5 tri-SnRNP related factors
121996302
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
121996302
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121996302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
121996302
NCBI-ProteinID:
XP_042406155
LinkDB
All DBs
Position
6A:complement(38889666..38918676)
Genome browser
AA seq
983 aa
AA seq
DB search
MTSLKRRAIDDASPDTVTPSKIPREASSIRTDACLHDVSYPDGYASLPRPRLADDKRKPP
AREFPFELDPFQCEAIKCLDAGQSVMVSAHTSAGKTVVALYAIAMSLRDQQRVIYTSPIK
ALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMREVAWIIFD
EVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR
PTPLQHYIFPSGGNGLYLVVDDKGKFREDSFQKALNALVPDEGSKRNNMKWQKELLVGKP
REDSDIFKMVKMIIQRQYDPVILFSFSKRECELLAMQMAKLDLNEEDEKVNLETIFWSAM
DILSDDDKKLPQVTNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIG
LNMPAKTVVFTNVRKYDGDKFRWISSGEYIQMSGRAGRRGIDQRGICILMVDEKMEPSTA
KLMLKGSADSLNSAFHLSYNMLLNQMRCEDGDPEKLLRNSFYQFQSDGALPSLEKQLKEL
KIERDSMVIEEEESLKDYYNLLEQYRSLKNDVRDIVFTPKYCLPFLQPGRLVKIRLLGDD
KMPSFSTEEQVTWGVILNFERVKGSAEDKRPEDANYKLDVLTRCAVNKGDMKKSTRIIPL
NERGESVVVPLPLLQVDSLSSIRLFIPKDLLPLEARENTLKKVSEVLSRFAKDGVPLLDP
EEDMKVQSNSYKKAVRRIEALESLFDRHEVRKSPLIEQKLKVLHTKLELTARIKSLKKVK
QSSTALAFKDELKARKRVLRRLGYITREDVVELKGKVACEISTADELTLTELMFTGIFKD
VNLEEMVALLSCFVWQEKLQDAPKPRESLDLLHSHLQEIAKRVGNVQLECKIQIDVEKFV
NSFRSDIMEVVYSWTKGSKFYEIMELSQVFEGSLIRAIRRLEELLQQLILASKSIGEIEM
ESKFEEAVTKIKRDIVFAASLYL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgttgaagagaagagctatagatgacgcgagtccggacaccgtaacgccctct
aaaattccgagggaggcgtcttccatccgcaccgacgcttgtctccatgacgtctcttat
cccgacggttacgcttccctgccgcggcctcgactcgctgatgacaagcggaagcctcca
gctcgggagttccccttcgaactcgaccccttccagtgcgaagctatcaagtgccttgat
gccggtcaatccgtgatggtttcagcacatacatcagcagggaagactgttgttgcgttg
tatgctattgctatgtctttgcgagatcaacaacgtgtcatctatacctcacctatcaag
gctctcagcaaccagaagtacagagaatttaaggaagaattttctgacgttggtcttatg
actggggatgtcaccattgaacctaatgcttcttgcttggtcatgactacagagatttgg
cgtagtatgcaatataaaggatcagaagttatgagggaggtggcttggattatttttgat
gaagtccattatatgcgtgatagggagagaggtgttgtttgggaagaaagcatagtcatg
gctcctaggaactcaagatttgtgttcctgtcagctacagttcctaatgccaaagaattt
gctgattgggttgcgaaggttcatcaacaaccttgtcatattgtctatacagattatcga
cctactccacttcagcactatatttttccttctggaggcaatggactatacttggtagtg
gatgacaagggaaaatttagagaggacagttttcaaaaagcattaaatgctcttgttcca
gatgaagggtctaaacggaataatatgaaatggcaaaaggaattgctagttggaaaacct
cgtgaagatagcgatatcttcaagatggtcaagatgataatccagcgacagtatgatcct
gtaatacttttcagctttagcaaaagggagtgtgagcttcttgcgatgcagatggcaaaa
ttggacttgaatgaagaagatgaaaaagttaaccttgaaacaatattttggagtgctatg
gatatactttctgatgatgacaagaagctgccacaggtgacaaacatgctacctttgcta
aaacggggaattggtgtacaccattctggtctacttcccattctcaaagaagtaattgaa
atactttttcaggaggggctcatcaagtgtttgtttgcaacagaaaccttcagcataggt
ttgaacatgcctgcaaagacagtagtttttacaaatgtacgcaaatatgatggtgataag
tttcggtggatttccagtggtgagtatattcaaatgagtgggcgtgctggccgtcgtggt
atagatcagcgaggcatctgtattttaatggtggatgagaagatggaaccttctactgct
aaattaatgcttaaagggagtgctgatagtttgaatagtgccttccacctaagctataac
atgctgctgaatcaaatgagatgtgaagatggtgatccagaaaaacttcttcggaattca
ttttatcaatttcaatcagatggagctcttcctagtctagagaaacaattaaaggaattg
aaaatagagagagattctatggtgattgaagaggaggagagtttgaaggattactacaat
ctattggagcagtatcgaagcctaaagaatgatgtccgtgatattgtattcaccccaaag
tattgcttaccctttttacagcctggcaggcttgtgaaaattcgacttcttggtgatgat
aaaatgccgtcattctcaactgaggaacaggtgacatggggagtaatacttaattttgag
agggtaaaaggttcagccgaagataaaagacccgaagatgctaattacaaacttgacgtt
ctcacgaggtgcgctgtgaacaagggagacatgaagaaatcaacaaggattattccttta
aatgaacgtggagaatctgttgttgtgccactacctctgttgcaggttgatagcttaagc
agcattcgtctcttcatccctaaagatcttttgccactagaagctcgggagaatacactg
aaaaaagtatcagaagttctttcaaggtttgccaaagatggggtgcctcttttagatccc
gaggaagatatgaaagttcaatctaactcgtataaaaaagctgttagaaggattgaggca
ctggaaagcttatttgataggcatgaagtaaggaagtcgccgcttattgaacaaaagctg
aaggttttacatactaagctagagttaactgccagaatcaagtcactaaaaaaagtaaag
cagtcttcaaccgcccttgccttcaaagatgagctcaaagcaaggaaacgagttcttcgt
aggcttggttacattaccagagaggatgtagtagagttgaagggcaaggtggcctgtgag
ataagcacagctgatgaactgacacttactgagctaatgttcactgggatctttaaggat
gttaatttggaagagatggtagctctgctttcttgttttgtttggcaggagaaactccaa
gatgctccaaagccaagggaatctctcgatctccttcactctcatctacaagagattgca
aaaagggttgggaacgttcaacttgaatgcaagatccaaattgacgtggaaaaatttgta
aattcttttcgctctgacatcatggaagttgtatattcttggacaaaaggatcaaaattt
tacgagattatggaactatctcaagtatttgaaggcagcttaatcagggctataagaagg
ctggaggaacttctgcaacaactaattttggcctcaaagtctattggagaaattgaaatg
gaatccaagttcgaagaggccgtgactaaaattaagcgagacattgtttttgctgcatct
ctatatttgtag
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