Zingiber officinale (ginger): 121996315
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Entry
121996315 CDS
T08725
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121996315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996315
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121996315
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121996315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
ATP_bind_1
SRPRB
AAA_24
ABC_tran
Motif
Other DBs
NCBI-GeneID:
121996315
NCBI-ProteinID:
XP_042406183
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Position
6A:complement(39957201..39969549)
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AA seq
424 aa
AA seq
DB search
MASSRQFKLAKESELRVEVGPDMPLRIRLLSGTAEIFGTELPPSNWLSISPRSKIAVFTW
NGATIELDGISEVEYVADETPMVSYVNVHAILDARRAQAKASHSSNVDSPQGPRVIVVGP
TDSGKSSLCKMLLSWACKQGWKPTYVDLDIGQGYITIPGCIAATPVEMPIDAVEGIPLEM
PIVYFYGHTSPTANGDLYKVFVKELARTLERQFSGNAEARAAGMVINTMGWVEGLGYELL
LNAIDTFNCDVVLVLGQEKLCSMLKEVLKTKPKVDVVKLHKSGGIVMRNQKVRQKARSLK
IREYFYGPINDLSPHSNIVNFSDISVYRIGGGPQAPRSALPIGAEPVADPTRVVAININR
DLLHLVLAVSYAKEPDQIISSNVAGYIYVTDIDVVRKKITYLAPCPGELPSKLLIVGTLT
WLEG
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtccagacaatttaaattagcgaaggagagtgagctcagagtcgaggttggc
cctgacatgccccttcgcattcgcctcctctctggcacagctgaaatatttggtactgag
ttgcctcctagcaattggctctccatctcaccacgcagcaaaatcgcagtgttcacttgg
aacggcgccacgatcgagttggatggaatcagcgaagtggagtatgtggcagatgagaca
cccatggtgagctacgtgaatgttcatgccatacttgatgcaagaagggctcaagcaaaa
gcatcacatagtagcaatgtggactctccgcagggccctagggtgattgttgtgggaccc
acagattctgggaagagtagcttgtgcaaaatgcttctaagctgggcttgtaaacaagga
tggaaaccgacctatgtggatttggacattggtcagggctacataactattcctggctgc
atagctgctactccagttgagatgcctatagatgcagtggaaggaattcctctagaaatg
cctattgtgtatttttatgggcacacatctcctactgcaaatggtgatctttataaagtg
tttgtgaaggagttggctagaaccctagagaggcagttctctggaaatgctgaagctaga
gctgcaggcatggtgattaatactatgggatgggtggaaggccttggttatgagttactt
ctcaatgctattgatacatttaattgtgacgtggttctagtcttgggccaggagaaactt
tgcagcatgcttaaagaagttttaaaaaccaagcctaaagtagatgttgtgaaactccat
aaatctggagggatagttatgaggaatcaaaaagtacgccaaaaggctaggagtttgaaa
atcagagaatacttctatgggcctataaatgatctctccccacattcaaatattgtcaac
tttagtgacatttctgtttatagaattggtggtggcccacaggctcctcgttctgcactg
cctattggtgcggaacctgtagccgaccctactcgagtagttgctattaacataaatcgt
gacttactccatcttgttctagctgtttcatatgcaaaggagcctgatcagattatatcc
agtaacgttgcagggtacatttatgtcaccgacatagacgttgtgaggaagaagatcaca
tacctcgcaccttgccctggcgaactcccaagtaaactcttaattgttggaactttaaca
tggttggaaggttaa
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