Zingiber officinale (ginger): 121996392
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Entry
121996392 CDS
T08725
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121996392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996392
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121996392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Peptidase_M15
Motif
Other DBs
NCBI-GeneID:
121996392
NCBI-ProteinID:
XP_042406288
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Position
6A:complement(56981413..56997951)
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AA seq
252 aa
AA seq
DB search
MTTSTYSPSQNSDNKRRRQQRRLFQEADWARSDGRTFQQCRPAFLRTGAASAASGSAYAE
FGATKVIVSVFGPRESKKAMLYSNTGRLNCNVLYTTFSTSIRGQGTDNKEYSSMLHKALE
GAIILETFPKTTVDVFALVLESGGGDLPVIITCASLALADAGIMMYDLVSAVSVSCFGKN
LVIDPTLEEEACQDGSLMVTCMPARNEVTQLTLTGEWTTPKINEAMELCLDACSKLAEIM
RSCLKEAASVPS
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcgacttattctccgtctcagaactcggacaacaaaagacggcggcagcag
aggaggctgttccaggaagccgattgggctcgttctgatggccgaacctttcagcagtgc
aggccagcgtttctcagaactggtgctgctagtgctgcttcaggatctgcctacgcagag
tttggagcgaccaaggtcattgtctctgtgtttggtccaagggagagcaagaaagctatg
ctgtacagcaatactggaagattaaactgcaatgttctttacacaactttttcaacttca
attcgcggacagggaacagataacaaggagtactcttcaatgcttcataaagccctggaa
ggggccatcattcttgaaacattcccaaagactacagttgatgtttttgcattggttctg
gaatctggtggtggggatcttccagtgatcataacttgtgctagtcttgcacttgctgat
gctggaatcatgatgtacgatcttgtttcagctgtttctgtgtcttgttttgggaagaac
ctagttatcgatcccactttggaagaggaagcttgccaagatggtagcctcatggttaca
tgcatgcctgctcgtaacgaggtcactcagctgaccctcacaggagaatggacaactccc
aaaattaacgaggcaatggagttgtgtctggatgcatgttctaagcttgcggagatcatg
aggtcatgtctgaaggaagctgcttctgtaccaagttga
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