Zingiber officinale (ginger): 121996635
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Entry
121996635 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121996635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121996635
03009 Ribosome biogenesis [BR:
zof03009
]
121996635
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121996635
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
121996635
Complex B
121996635
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
121996635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
121996635
NCBI-ProteinID:
XP_042406592
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All DBs
Position
6A:76789910..76797433
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AA seq
1138 aa
AA seq
DB search
MAGGSTSSRPRYAPDDPTLPKPWRALVDGSTGYLYYWNPETNVTQYERPSDELPPPPPLL
PPPPPLLPPKSASVIAVSRHHPDDRRHRHDDDDRHDRSRIHQDGNGRSRNGHSTKEKREG
KISTGGQGSSVNVGRASSIPVEAYRRQNEIIVTGEDVPAPFMTFESAGFPPEILEEVCRA
GFSAPTPIQAQSWPIALQSHDIVAIAKTGSGKTLGYLFPGFMHLKRLRNDCKLGPTMLIL
APTRELATQIQDEALKFGRSSRILSTCVYGGAPKGPQLRDLDRGVDIIVATPGRLNDILE
MKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPHRRQTLMFTATWPKEVRKIAADL
LVHPVQVNIGSSDELVANTSITQYVEVITPVEKQRRVEQILRNQDAGSKVLIFCTTKRMC
DQLSRTLARQFKAAAIHGDKSQAERDRVLSQFRTGRSPILVATDVAARGLDIKDIRVVIN
YDFPTGVEDYVHRIGRTGRAGATGVSYTFFCQQDSKYASDLVKILEGANQKVPKELKDMV
SRGGHGGRSRRWASRSDAKDNGRLVTGQSNLGGLLSLPSRSDSYLGSHGTNDREPLDRSR
GRVRSRSRSHSRDRKNNPSLKRARLASPPSRSRGSRSRSHSPKHALDRYRGGTKELTRVS
SQLPRRIPSPTTRHASPPSRNQGRSRSRSRSHSPNRGYDRHSGRTREVVHVSSLPRRMPS
PTAKHVNPSSRNHDRSPSKSCSPNPNRGYDHYGGGTNEVARSSSPLPKKMSSPTARHASL
PSKSPHSIDHVFDCHDEENREATHGSSALPNLIPSSTTRHASPPGRNCGHSQSRSLSCSS
DHGFDRYSERTRDAAHGSSPLSNQMPSPTVMHASPPGRSFGCSPSRSRSHSPNHVYSPND
GYDAHGEGSKEVTQVSSSFPKRMPSPAAGRENPHRNHVCSRSRSRSPNHGSDCFHGSAGQ
IASASPPLSRRGLSPIDCHASPPISNRGPSRSRSLSHSPGRGDVHYGQGSEQEPHVDLPL
PITVPALASHRTSDPNHSVMPYDNQRSQSSDGGNIAAVELNESHGQDERSRKPHGSDSPC
QWHKRSPLKNEDFNPQLSVPRPAQLPVLPLNSHVEEEEGMIPADEDSLIFQEDGRTSP
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggaagcacatcgagccggccgcggtacgctccggatgatccgactctgccc
aaaccttggcgggcgctggtggacggaagcaccggctacctttactattggaacccggaa
actaacgtcacccagtacgaacgcccgtccgatgagctccctcctcctcctccactcttg
cccccgcccccaccgctccttcctcccaaatccgcttctgtgatcgccgttagccgtcat
catccagatgatcgccgtcatcgtcacgacgatgacgatcgccatgatcgttcaaggatc
caccaggatggaaatggcagaagcaggaacggacatagcacaaaggaaaaaagagaaggg
aagatctcaactggaggccaaggatcatctgtcaatgttggaagggcttcttccatacct
gtagaagcttatcgtcgtcaaaatgaaataattgtgacgggagaagatgtgcctgcacca
ttcatgacatttgagtctgcaggtttcccacctgagattttggaagaggtatgccgtgct
ggtttttctgctccaactccaattcaggctcagtcatggccaattgcattacagagtcat
gatatagtggctattgcaaaaacaggatctggaaaaacattaggatatctttttcctggg
ttcatgcacctcaagcgccttcgaaacgactgtaaactaggtcctacaatgttaatattg
gcaccgacaagggaattggcaacccagatacaggacgaagctttaaaatttggcagatca
tcaagaattctaagcacgtgtgtgtatggaggagcacctaaagggccccagttgagggat
cttgatcgaggagtggacattattgttgcaactccaggaagattaaatgacattttggaa
atgaaaagagtgagtctccgtcaggtttcatatttagttcttgacgaggctgatagaatg
ctggatatgggttttgagccacaaattcgaaaaatcgtgaaagaagtaccccatcgtcgc
caaacacttatgttcactgctacttggcctaaagaagttcgaaaaattgctgcagattta
cttgttcatcctgttcaggtcaacattggcagttcagatgagcttgttgcaaacacttct
atcacacagtatgtagaagtaattactcctgtggagaaacaacgccgagtggagcaaata
ttgcgcaatcaagatgcaggctccaaggttctcatattttgcaccacaaagagaatgtgt
gaccagctgtctcgaacacttgcacgtcagttcaaagctgctgctattcatggtgacaag
tctcaggccgagagggatagggttttaagccaatttcgcacgggtagatctcccatacta
gtagccacagatgttgctgctcgcggtctagacattaaggatatcagggtggtcataaac
tatgacttccccacaggagttgaagactatgttcacagaattggtagaactggtagggct
ggtgcaactggagtctcctacacctttttttgtcaacaggactccaaatatgcttcagat
cttgttaaaattctcgaaggtgctaatcagaaggttccaaaagagctaaaagacatggtt
tcacgtggtgggcatggtggcaggtcacggcgctgggcttcccgttcggatgccaaggat
aatggccgcttagttactgggcaaagcaatttgggtggtttgctatcacttccaagtaga
tcagattcttatcttggcagtcatggcaccaatgaccgcgagccacttgacagatctagg
ggccgggttcgtagccgcagccgcagtcatagccgtgatcggaagaacaatcccagctta
aagagggctcggcttgcaagccctcctagcaggagccgtggtagcaggagtcgcagtcac
agtcctaaacatgcccttgatcggtaccgtgggggaacaaaggagttgacgcgtgtgagt
tcacaactcccaaggaggattccatcgccaactactaggcatgcaagccctcctagtagg
aaccaaggtcgcagtcgaagcaggtcgcgcagtcacagccctaaccgtggatatgatcgt
cacagtgggagaacaagggaggtggtacatgtaagttcacttccgaggagaatgccatca
ccaacagctaagcatgtaaatccttccagcaggaaccatgatcgcagtccaagcaagagc
tgcagtcccaatcctaaccgtggatatgatcattatggtggggggactaatgaggttgca
cgctcaagttcaccactcccaaagaagatgtcatctcccacagctagacatgcaagcctt
cctagcaagagcccccacagtattgaccatgtcttcgattgtcatgacgaggaaaatagg
gaggcgacacatgggagttcagcactgccaaatctgattccatcatcaactactaggcat
gcaagccctccaggtaggaactgtggtcacagtcaaagcaggagcctcagctgcagttca
gatcatggctttgatcgttatagtgagagaactagggatgcagcacatgggagttcacca
ctctcaaatcagatgccatcaccaaccgttatgcatgcaagccctccaggcaggagcttt
ggctgcagtccaagcaggagtcgcagtcacagtcctaaccacgtctacagtcctaatgat
ggctatgatgctcatggtgagggatctaaggaggtgacacaagtgagctcatcattccca
aagaggatgccatcaccagcagctgggcgtgaaaatcctcataggaaccatgtctgcagt
cgaagcagaagtcgcagtcctaaccatggctctgattgttttcatgggtcagctgggcag
attgctagtgcgagcccaccactctcaaggaggggcctgtcaccaatagattgccatgca
agcccccctatcagcaaccgtggcccaagtcgaagcaggagccttagccacagtcctggt
cggggcgatgttcattatggtcagggaagtgaacaggaaccacatgtcgatttgccactc
ccaataacagtgccagcactagcatctcatcgcacgtctgacccaaaccattcagtgatg
ccatacgacaaccaaagatcgcagtcaagtgatgggggaaacatagcagcggtggaactc
aacgagtcacacggtcaggatgagagaagcagaaaaccacatggttcagatagcccatgt
cagtggcacaaaaggtctccacttaaaaatgaagattttaatccacagctgtcagttcca
aggcctgcccagttgccagtgttgcctctcaacagccatgtagaggaggaagaaggcatg
attcctgcagatgaggacagtttaatttttcaggaggatggtaggacttcaccatag
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