Zingiber officinale (ginger): 121996658
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Entry
121996658 CDS
T08725
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121996658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121996658
03036 Chromosome and associated proteins [BR:
zof03036
]
121996658
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121996658
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121996658
PBAF complex
121996658
GBAF(ncBAF) complex
121996658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
SANT_DAMP1_like
DUF4715
MVD-like_N
Motif
Other DBs
NCBI-GeneID:
121996658
NCBI-ProteinID:
XP_042406626
LinkDB
All DBs
Position
6A:complement(77934754..77942168)
Genome browser
AA seq
778 aa
AA seq
DB search
MSPASPSDSRLKWRKRKRDANPRRQKPPEAEEDEEENDEDASVPVRADAEEDGRSSPPIP
AAADPVLDLRVSEVLSDGGQRIADFPTAFRRTVNRPHPSVLALVAAERSNSAARSWSPPL
LENISHGQMQALSAVLPDNPSLQQPADLDKPSTYVCTPPPLMEGKGMVKLFDKEQLLIVP
MHSDWFSRNTVHRLERQVVPHFFSGKSSDHTQEKYIGLRNTIISKYLENPGKRLSFADCQ
ALVPNNDLYDLSRIVRFLDHWGIINYLAASSVHRGLRMAGSLLREDVNGELQLQTAPLKS
IDSLILFDRPKCSIRLEDIAFFSRSAQDSDAFIGDLDSRIRERIAEHTCNFCSCPLTKLH
YQSQKEIDIMLCSNCFHDAKFVTGHSSLDFVRMDSVKDDSDLEGDNWTDQETLLLLEAME
KYNDNWIEIAEYVGTKSKAQCILHFLRLPMENGLVESIELQHIPTSDFVDRQDYFISSSN
SNGKISGNQDFSSAKPLPFINSSNPVMSLVAFLTSAIGPRVAAACASAALSVLTREDSSN
GSDNLHADVDTHAPHASFSQKDGTVEGRLQHPKNASTSLASELVEQATMAGLSAAAVKAK
LFADQEEREIQRLVATIINHQLKRLELKLKQFAELETLLLKECEQSERVRQRLSTERIRM
MSTRFGASSNNVPSAGGAASAAPVAAPAAMGTNPATGQPPMVPAGAQASFGNSLNAGHRQ
MQLMQRQQMFGFGPRLPLSAIHPAPVSQNPGFNSAIPNNSTPNHHPLSRSSSSGNTRI
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccgcttctccttcagattcccggctcaaatggcggaagaggaagcgggatgcc
aatcctaggcgccagaagccacctgaagccgaggaagatgaggaagagaacgatgaggat
gcctccgtccccgtcagggcagatgcggaggaggacggccgtagctctcctcccatcccc
gctgcagctgaccccgttctcgacctcagagtgtctgaagtcctctccgacggtggccaa
cggatcgctgattttcccaccgcttttcgccgcactgtcaatcgccctcacccttctgtc
ctcgctcttgtggccgccgagcgctccaactctgccgcccgttcatggtctcctccatta
ttggagaacatttctcacgggcagatgcaggccctctcggcagtgctccccgataatcct
tcattgcagcagccagcggacctggataagccctccacttatgtatgcacaccaccgcca
ctcatggaagggaagggcatggtaaagctgtttgacaaggagcagcttctcattgttcca
atgcactctgattggttttcacgaaacactgtccaccggctggagagacaagtggtgcca
cacttcttctctggaaaatccagcgatcacacccaagagaagtacataggtcttcggaac
actataatttccaaatacttggaaaacccagggaagaggctttcctttgccgattgccaa
gcattagttccaaacaacgacctatatgatcttagtcggatagtgaggtttttggatcat
tgggggatcattaactatctggctgcttcttcggtccaccgtggccttaggatggctggt
tcccttctcagagaggatgtcaacggcgagcttcaacttcaaactgcacctttgaagtcc
atagacagtttaattttgtttgatagaccaaaatgcagcattagactagaggatattgct
tttttctctcgttctgcacaagattcagatgcctttattggagatttggatagcagaatt
agggaacgtattgcggagcatacctgcaatttctgctcttgccctctgaccaaattacac
tatcaatcacagaaggagattgatataatgctgtgctccaactgtttccatgatgcaaaa
tttgttaccgggcactcaagtttggattttgtaagaatggattctgtaaaagatgattca
gatcttgaaggggataactggacagaccaggaaactttgctgttacttgaggccatggag
aaatataatgacaactggattgaaattgcagaatacgttggtaccaagtccaaggcacaa
tgtattttgcattttcttcgtcttccaatggaaaatggcctagtggaaagtattgaactt
caacatattccaacatctgattttgttgatagacaagattattttatttcatcttcaaat
tctaatggtaaaatttcaggcaatcaagatttcagcagtgccaaaccacttccatttatt
aattcctctaatccagtcatgtctctggtagccttcctgacctctgcaattggaccaagg
gttgctgcagcctgtgcaagtgcagcattatctgtcttgactagagaagactcaagcaat
ggatctgataatttacatgctgatgttgatactcatgcaccacatgcaagcttcagtcag
aaagatggaactgtagaaggacgattgcaacatcctaaaaatgcttctacttcgcttgct
tcagaactcgttgaacaagctacaatggccggcctatctgcagctgcagtgaaagcaaaa
ttatttgcagatcaagaggaacgtgaaattcagaggctggttgctactattataaatcat
cagctgaagagattggagttgaagctaaagcagtttgcagagctagaaaccttactgctg
aaggaatgtgaacagtctgagagggtgcgacagcggctttcgactgagcggattcgaatg
atgtccacccgctttggagcctcatcgaacaatgtaccatcagctgggggagcagcatca
gcagcccctgtagcagctcctgcagccatgggcactaatccagcaactgggcagccaccc
atggtgccggcaggtgcacaggcttcctttggcaacagtcttaatgctggccatcggcag
atgcagttgatgcaacggcagcaaatgtttgggtttggacccaggttgccactctctgct
atccacccagctcctgtctctcagaatcctgggttcaactccgcaataccaaacaattcc
acacctaaccatcatccactgtcaagatcatcgtcgtcaggcaatactcgaatatag
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