Zingiber officinale (ginger): 121996703
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Entry
121996703 CDS
T08725
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121996703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996703
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121996703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
121996703
NCBI-ProteinID:
XP_042406697
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Position
6A:80460951..80469310
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AA seq
650 aa
AA seq
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MPRKVNFGLDYDDGYDNYDDYDYDYDHEVKDDDYDKDNVASQLGKDANKQGIWLCPICSY
DNDETSFCCDICGAIQVYASNYGKQKEYILCTVNPASKDTGASAMSKSHAQISMATPKTN
NLVDVFQSKRPNLYEKVQPDYRSAESNGKGKEALILSSPDNASESESSYSRENKDTIAPL
SSNLNQLKLDKHPIYNRKTNTETQYQPEEWMLIDKGPGTLQQLNLAIVGHVDSGKSTLSG
RLLHLLGKVSKKEMHKYEKEAKEKGKGSFAYAWAMDESSAERERGVTMTVAVAYFDSKKY
HVVLLDSPGHKDLVPNMISGATQADAAVLVVDASTGSFEAGMDGYGIGQTREHAQLVRSF
GVEQIIVAVNKMDVVGYSKERFNFIKSQLGAFLRSCGFKDSSIIWVPLSVVENQNLVTTT
TDVRLSSWYRGFCLLDAIDSLQTPLRDVSKPLILPICDAIKTSMGNFAACGKLETGAICN
GSKVLVMPLGELATIRSIERDSISYNSARAGDNVAVTLQGINSGHVLAGGVICHPDYPMQ
VAKHLELKILVLDISTPILVGSQVEFHIHHAKEAGRVAKMVALLDQKTGKVSKAPRILKG
KQSAIIEVQLDGAVCVEEFSKSKALGRAFLRSSGTTIAVGIVTRILEHES
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagtcaattttgggcttgactatgatgatggatatgacaattatgatgat
tatgattatgattacgatcatgaagtaaaagatgatgactacgacaaagataatgtggca
tctcagcttggtaaggatgccaacaagcaaggaatctggctttgtccaatttgctcatat
gacaatgatgaaacttcattttgttgtgacatttgtggagctattcaagtttatgcttcc
aattatggcaaacaaaaagagtatatactttgtacagtaaatcctgcaagcaaagataca
ggagcatctgctatgtccaagtctcatgcacaaatttctatggcaacacccaaaacaaac
aatcttgttgatgtctttcagagcaaaaggcctaatttgtatgagaaagtacaaccagat
tatagaagtgcagaatcgaacggtaaagggaaagaggctctaatattatcttcaccggat
aatgccagtgaaagtgagagcagttattccagggaaaataaagataccatagcaccattg
agcagtaacctaaaccagttaaagttggataaacatcccatttataacagaaaaacaaat
acagaaactcagtaccaaccggaagaatggatgttaatagataaaggaccaggaactctg
cagcaattgaatcttgcaattgtcggtcatgtggactcggggaaatctaccttgtctgga
agattgctacatcttttgggaaaagtttccaagaaagaaatgcataaatatgaaaaagag
gctaaagaaaagggaaaaggttcatttgcttatgcatgggcaatggatgagagctctgca
gagagggaaaggggtgtgaccatgacagttgctgttgcatactttgactccaagaagtat
catgttgttttacttgactctcctgggcacaaagatttggtaccaaatatgatttcaggt
gctacacaagcagatgcagcagttctcgttgtggatgcatcaactggttcctttgaggca
ggtatggatggttatggtattggacaaacaagggagcatgctcaactagttagaagtttt
ggtgttgagcaaatcattgttgctgttaataagatggatgttgtggggtattcaaaggaa
agatttaattttataaaatcacaacttggtgcatttcttcgttcctgtggattcaaagat
tcctcaatcatttgggttcctcttagtgtggtagaaaaccagaatctggttacaaccacc
actgatgttaggttatcttcctggtatagagggttttgtctgttggatgcaatagattca
ttgcagacacctctgagggatgtttcaaagccgcttattcttcctatatgtgatgccatc
aagacatcaatggggaattttgcagcttgtggaaagttagagactggagctatctgtaat
ggttccaaggttctggttatgcctctaggagagctagcaactatacggtctatcgagcga
gactcaattagctataattcagcaagagctggtgacaatgtagctgtcaccttacaaggt
atcaattctggtcatgttctagctggtggggtgatctgccatcctgattatccgatgcaa
gtagctaaacatttggagctaaagatactcgtcttggacatctccacaccaattctggtt
ggatctcaggttgaattccacatccatcatgcaaaagaggctggaagggtggcaaagatg
gtagcgttgctggaccagaagactggcaaagtctccaaagcaccgcgcatcctcaaggga
aaacaaagtgccatcatagaggtgcaactggacggagctgtatgtgtggaggagttctct
aagtctaaagcccttggaagggcattcctaaggtcatcaggaactacaattgcggttggt
atcgtgacccgaatacttgagcacgagtcatag
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