Zingiber officinale (ginger): 121996765
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Entry
121996765 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121996765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121996765
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121996765
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
121996765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
121996765
NCBI-ProteinID:
XP_042406788
LinkDB
All DBs
Position
6A:84642598..84650965
Genome browser
AA seq
1498 aa
AA seq
DB search
MDRSQKRKISDGELPVKKRACRSTERLPVSFASRTELQRSISAGSDRGKGLPDHGLLGSD
NRAMGLSKRRVHRVVARLADDGSGESAQLEALTELCEMLSFVMEDAIERFPLEELVPSLL
KLNANGRNPEIMLLAIRALTYLLDARPSSAAAIARHGGITVLCGKLLAIEYLDVAEKCHQ
ALEKISRGYPVACLKAGAVNAVLTYIDFFPSNIQRVAVITVTNMCKELSPDYSSIIMEAV
PSLCTLLQYENKELVETVSTCLAWVAYSVRYSPILTDELCKHGVIQKSLELIDNDSHRSI
SSMTFSSLVGLLTRLASHSQLAVRILFELSISRTLRGILIGSDMSHNSAYASTEDVQNNQ
VWEALKLTNQLIPEKKKDVPVNKLIQAKEKILMDEPNFLYQFAMEFLPASIQVVNSGAND
YVCYGCISIIRRIAHYSTPEILLDSIKDTNISSFLAGLLSRKDIHLLISTLEIVEILMQK
LPGVFLSSFIKEGVFYAIDMLLVQDKCIESVPHSDEKIAVSVVSRCMCFAFTPSSVPSSQ
LKTCKLGKDAIHNLGRKIKASYYLGHGAANSDMSCSKTLQHLRTLCRVLDDSMDTHSDDV
GNLHEVKFSTQILDEVMRELSQGESLSTFEFVESGIARSLAHYLCNGKFLLGIHDSGLSD
HILAVQKRFQIFASICLSKPSQNRDDTILACLLKNLQDALSSLDNFPVVRSQQLKPRKSY
TDIPCSSPTMNPCLKVSFVRDNKDSNLLDFDNVLSIDISSSLVDAVEAYLWPKVSAMNRH
QSEAVDYHISKLNLRASRLHHDSEGSSTEAYMNISYETYISNSLEVIRSQEEQLLPVKTS
TKLTTDTEVAQGRITTVSPCMVNTKPRLTFSLRGKQLDRSKTLYQAVLEDQVSPGFDMIV
GSKFWNQTYEFTYRIAEEDIANKNNMLDLVSQSNIFLNRLGFSFLKLPFFPTKLQAEMLS
NIDRMNTSYDILFMLKILEGLNQFSMELSVNDRIQEFAEGRIDNFDDLKVIVSPVPKVDF
VSSKLTEKLEQQMRDQLVLNTGCFPSWCSQLTSACPFLFSFEARLKYFYLTAFGSLRNQN
NNIRHSDRSSMNSSEWHLVTSFHSRKKFKVDRNNILECAAKIMKLHAQSKGSLEVEYADE
VGTGLGPTMEFYTLVSHEFQKVGLGMWREDYCAAKSSVCSDSSVLFAPCGLFPCPWSRKR
SGGIKFSDVKKKFSLLGKLVAKAIKDGRTMDISFSNAFYKIMLEQELNICDIQSFDPDLG
RTLLEFQALVNRKKFVESASGERDKDPSKLYYRSMAVEDLSLDFTLPAYTDYALASESAK
MVNIANLEEYVALVIDATIGSGVARQINAFKSGFNEVFPLRYLQIFTEGELEQLLCGEQD
TWDFFQLVNHIKFDHGYSVSSLMATHLLEIIQEYDYDQRRAFLQFVTGAPRLAHGGLAAL
NPKLTVVRKHSSFDADLDLPSVMTCANYLKLPPYSSKEIMRERLLYAITEGQGSFHLS
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtagtcagaagcgcaagatctctgacggagaactcccggtgaaaaagcgcgct
tgcagatcgacggagcgcctacccgtctcgttcgcctccagaacagagttgcagcgctcc
atctccgccggttcagaccgcggcaaggggttgcccgaccacggcttgttaggctcggat
aaccgtgctatgggtttatcgaagaggagggtgcacagagtcgtcgctcgcctcgccgat
gatggttcgggggaatccgcgcaactcgaggcactgaccgagctatgcgagatgctctcc
ttcgtcatggaggacgccatcgagcgcttccccctggaggagctcgtgccgtctctattg
aagcttaatgccaatggtcgcaaccctgagattatgcttctggcgattagagcgctaact
tatctcttggacgccaggccttcttcggccgctgctatcgcgcggcatggcggaattact
gtcctctgtggaaagcttttggctatcgaatacttggacgttgcagaaaagtgtcatcaa
gcattggagaagatttcgcggggatatcccgttgcatgtttaaaagcaggcgctgttaat
gcagttttaacttatatcgatttctttccgtctaatattcagcgagtcgcagttataaca
gtaactaatatgtgcaaggaactctcgcctgattattcatcaattataatggaggcagtc
ccttcgttatgcactcttctgcagtatgagaacaaggagctggtagaaactgtttctact
tgtcttgcatgggttgcttactctgttcgctattctcctattttgactgatgaactgtgc
aagcatggagtgatacagaagtccttggaattgatagataatgatagtcacaggtcaatt
agctccatgactttttctagtttagttggtctcctcacaagacttgcctcacattctcag
ttagcagttcgcatcctatttgagcttagcataagcagaactttgagaggcatcttaata
ggttctgacatgtcacacaattctgcctatgcatctactgaagatgtccaaaacaatcag
gtatgggaagctttaaagttaactaatcagttgattcctgaaaaaaagaaagatgttcca
gtcaataaactaatacaagctaaggagaagattttaatggacgaacccaatttcttgtat
caattcgccatggaatttcttccagcttccatccaggttgtgaactctggtgcaaatgat
tatgtatgttatggttgcatttccatcataagacgtattgcccattatagcacacctgag
atacttctggactcgatcaaagatacaaatatctcaagttttttggcagggctgttgtcc
aggaaagatatacatctactaatttccacactggagattgttgagattctgatgcaaaaa
cttccaggtgttttcttaagctctttcatcaaggaaggagtattttatgcaattgacatg
cttttagtccaagataaatgcatagaatctgtaccacactcagatgagaaaatagctgtc
agtgttgtttccagatgcatgtgttttgcatttactccatctagtgttccctcttctcaa
ttaaaaacatgcaagcttggaaaggatgctattcacaatttgggaaggaagataaaagct
tcctactacttgggccatggagcagctaactctgatatgtcatgttctaaaactcttcaa
catctcagaactttgtgcagagtgctagatgatagtatggacacacattcagatgatgtt
ggtaacctacatgaagtgaaattttcaacacaaatattggatgaggtgatgagagagctt
tctcagggagagtctttgtcaacctttgagtttgttgagagtggtattgcaagatctctg
gctcattatttatgcaatggcaagtttctgcttggaattcatgatagtggcttatcagat
cacattctagctgtacagaagagattccagatattcgcttccatatgcttgtccaaacct
agtcaaaatcgtgatgatactattttggcttgcttattgaaaaatctgcaggatgcattg
tcttctttggataactttcctgttgtcagaagccaacagttgaaaccaagaaaaagttat
acagatatcccttgtagtagccccacaatgaatccttgtttaaaagtttcgtttgtacgt
gacaacaaagattcaaacttattggactttgacaatgtactaagtattgatatttcttct
tccttagtagatgctgtagaagcatatctctggcctaaagttagtgccatgaacagacat
cagtcagaggcagtggattaccatatcagcaaactaaacctcagagcttcaaggttacat
catgactcagaagggagttctacagaagcatacatgaacatctcgtatgagacttatatt
tctaattctttagaggtgattagaagtcaagaggagcagcttttaccagtaaagactagc
acaaaactgacaactgatactgaagttgctcaaggaagaatcacaacagtatctccatgc
atggtgaatactaaaccaagattaacttttagcttgagaggaaaacaacttgaccgctca
aagaccctttatcaagcagttctagaggatcaagtatctccaggatttgacatgattgtg
gggtccaaattctggaatcagacttatgaatttacttatagaatagctgaagaagacata
gcaaacaagaacaacatgttagatttggtttctcagtcaaatatcttcttgaataggctt
ggattctcattcctgaaacttccctttttccctaccaaattacaagctgaaatgctttcc
aacattgatagaatgaatacctcatatgatattttatttatgttgaaaatattagagggc
ttgaatcaattttcgatggaactgtcagttaatgatagaattcaagaatttgcagaaggg
agaatagataactttgatgatttgaaggtgatagtttctccagtaccaaaagttgacttt
gtgagcagcaagctaactgagaagttggagcagcaaatgagagatcagctggtactaaac
actggttgttttccatcatggtgtagccagttaacgagtgcatgtcctttcttattttcc
tttgaggcaagattgaagtacttctacctcacagcatttggttctttaagaaatcagaat
aacaacattcggcattcagatagaagtagcatgaactccagtgaatggcacttggttact
agttttcactcccgcaagaagtttaaagttgaccgcaacaatatccttgaatgtgctgca
aaaatcatgaaattacatgctcaaagtaagggctctcttgaagtagaatatgctgatgaa
gttggtactggtctaggtcctactatggaattctacactctagtaagtcatgaatttcaa
aaggttggattaggtatgtggagagaggactattgtgcagccaaaagtagtgtttgtagt
gattcttcagttttgtttgctccatgtggactgtttccttgtccatggtcgagaaaaagg
tcaggtgggattaaattctcagatgtgaagaaaaagttttcccttcttggtaagctggta
gccaaggcaattaaagatgggagaacaatggacatatcattttctaatgccttctataag
attatgctcgagcaggagctcaatatatgtgatatccagtcatttgatccagaccttgga
aggactttactggagtttcaagctctagtcaacaggaaaaaatttgttgaatcagcttct
ggagaaagagataaggatccatcaaagttatattacaggagcatggctgtagaggatctc
tctcttgatttcactcttccagcttacactgactatgcactcgcatcagaaagtgcaaag
atggtgaacattgccaatttggaagaatatgttgcactggtcattgatgcgacaattggc
agtggagttgcgagacaaattaatgccttcaaatctggatttaatgaggtattccctcta
agatatctccaaatcttcactgaaggtgagttggagcagttactctgcggagaacaagat
acttgggatttctttcagcttgtgaatcacatcaagtttgaccatgggtatagcgtgagc
agccttatggctacccatttgttagaaatcattcaagaatatgattatgatcagcgtaga
gctttcttgcaatttgtaactggagcacctcgccttgcacatggaggcttagccgctctt
aacccaaagctaacagtagttcgaaagcactctagttttgatgctgatctggacttgccg
agtgtcatgacttgtgcaaattatctaaagctcccaccttactcatctaaagagataatg
agagagagattgctatatgcgataaccgaaggtcagggatcgtttcacctatcatag
DBGET
integrated database retrieval system
