Zingiber officinale (ginger): 121996782
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Entry
121996782 CDS
T08725
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121996782
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121996782
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121996782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
Prok-RING_4
zf-RING_4
zf-ANAPC11
zf-RING_16
Phage_holin_2_4
Motif
Other DBs
NCBI-GeneID:
121996782
NCBI-ProteinID:
XP_042406829
LinkDB
All DBs
Position
6A:85363346..85367068
Genome browser
AA seq
320 aa
AA seq
DB search
MNARRQKSRYKSRSNDPPMTLRLRPNRDLTAASPAAASFFPYSLLFLVCCFSSLTRPSSA
LVHLRSKPFSFTFLDAPARFAVPVDGSGICGSLRVAEPLDACSGIENNWTTLGDGDGGGD
SRFVLISRGVCNFEEKVRNAQDAGFGAAIIFDDQEKSSLYSMVGDSDGIHIHAIFVSKMA
GETLMKYARGEEGECCIGSSMDEAAGTILVISFVSLVFIIIVLAAFMLARNCRLLRQRAQ
NSPASMKREAVELLPCLTFRTAFLSSKQTAETCAICLEDYRDGESLRVLPCQHDFHLVCV
DSWLTKWGTFCPVCKHNMRT
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcacggcgacagaagagccggtacaagtcccgctctaatgaccctccgatgact
cttcggctacgccccaatcgtgacctgaccgccgcctctcctgccgccgccagtttcttc
ccctactccctcctattcctcgtctgttgcttctcctccctgacccgcccctcctccgcg
ctcgtccacctgcgctccaagcccttctccttcacattcctagacgctcctgcacgcttt
gctgttccggtcgatggatccgggatctgcggctcgctgcgcgtcgcggaaccccttgac
gcttgctccggtatcgagaacaactggacgactcttggcgacggtgacggaggaggagat
tcgaggtttgtcttgatttccaggggtgtttgcaacttcgaggagaaggtcagaaatgcg
caggatgcgggatttggggctgccataatattcgacgaccaggagaagagcagcttgtac
tccatggttggagattctgatggcatacatatccatgcaatttttgtttcaaagatggca
ggtgagactctgatgaagtatgctcgaggtgaagaaggggaatgttgcataggatcctcg
atggatgaagctgctggaaccatcctggttatatcatttgtatctctagtattcataata
atagtacttgctgcattcatgttggctagaaactgtcggcttcttcgacaacgagcacaa
aactcaccagctagcatgaaacgagaagcagttgagctacttccctgcctcacatttaga
actgcctttttaagtagcaaacagacagccgagacatgtgctatttgccttgaagattac
agagatggagagtctcttagagttctgccttgtcaacatgacttccatttggtgtgtgtg
gattcatggttaaccaagtggggaacattttgcccggtttgcaaacataacatgcgcaca
tga
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integrated database retrieval system
