Zingiber officinale (ginger): 121996849
Help
Entry
121996849 CDS
T08725
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121996849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121996849
03036 Chromosome and associated proteins [BR:
zof03036
]
121996849
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121996849
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
121996849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_TEP1_2nd
WDR55
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
EIF3I
WD40_RFWD3
MIOS_WD40
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121996849
NCBI-ProteinID:
XP_042406919
LinkDB
All DBs
Position
6A:88724909..88730849
Genome browser
AA seq
345 aa
AA seq
DB search
MASKAQESPLNPNVFTLDSPHPVYAMAFSSSTAASSPRLALGSFLEEYGNRVELVGFDDD
ALAFRPEPALSFDHPYPPTKLMFHPLTIPLLASASDSLRIWHVGSDATDLRSLLDSSKSS
GYCAPLTSFDWNDLEPHRIGTSSIDTTCTIWDVDRGVIETQLIAHDKEVYDIAWGEAGVF
ASVSADGSVRIFDLRDKEHSTIIYESLRPDTPLLRLAWNKIDRCYMAVTMMDSNRVVVLD
IRYPTAPVAELQKHRASVNAIAWAPQAARHICSAGDDGQALIWELPAAAPGSGSSTAATT
AVAPEGIDPVLVYPAGSEINQLQWSAAHPDWIGIAFSNKVQLLRV
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaaagctcaagaatccccgctgaaccctaatgtcttcaccctcgactcgcct
cacccagtctacgccatggccttctcctcttccaccgccgcctcctctccgcgtctcgcc
ctgggctccttcttggaggagtatggcaaccgcgtcgaactggtgggcttcgacgacgac
gccctcgccttccgccccgagccagctctctccttcgaccacccttaccctcccaccaag
ctcatgttccaccccctcacaatccctctcctagcctccgcctccgactcgctccgcatc
tggcacgtcggctccgacgccaccgacctccgctccctcctcgacagcagcaagtccagc
ggatactgcgcgcccctcacatccttcgactggaacgacctcgagccccaccgcatcggc
acctcctctatcgacaccacctgcacgatttgggacgtcgaccgtggcgtcatcgagacg
cagctcatcgcccacgataaggaggtgtatgacattgcctggggcgaggccggcgtcttt
gcctccgtctcggctgacggatctgtccgcatcttcgacctccgcgacaaggagcactct
accattatctacgagagccttcgtcccgacacccccctcctccgcctcgcctggaacaaa
attgaccgctgctacatggccgtcaccatgatggatagcaaccgcgtcgtcgtgcttgac
atccgctaccctaccgcccccgttgccgaacttcagaaacaccgcgccagcgtcaacgcc
atcgcttgggcgccgcaggccgcgcggcatatttgctccgcgggggatgatggtcaggcg
ctgatctgggaattgcctgcggccgcaccaggtagtggctcctcgacggcggccaccacc
gcagtagctccagagggcatagatccagttctggtctacccagctggctcggaaatcaac
cagcttcagtggtctgctgcacaccctgattggattggaatcgccttctccaacaaggtg
cagctgcttagggtctga
DBGET
integrated database retrieval system
