KEGG   Zingiber officinale (ginger): 121997056
Entry
121997056         CDS       T08725                                 
Name
(RefSeq) DNA damage-binding protein 1a
  KO
K10610  DNA damage-binding protein 1
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03420  Nucleotide excision repair
zof04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121997056
  09124 Replication and repair
   03420 Nucleotide excision repair
    121997056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    121997056
   03400 DNA repair and recombination proteins [BR:zof03400]
    121997056
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     121997056
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      121997056
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      121997056
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_EML
Other DBs
NCBI-GeneID: 121997056
NCBI-ProteinID: XP_042407208
LinkDB
Position
6A:97171477..97189938
AA seq 1089 aa
MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTAHGLQPMLDVPIYG
RIATLELFRPHGEPQDFLFISTERYKFCVLQWDPDTSELITRAMGDVSDRIGRPTDNGQI
GLIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSRPTIVVL
YQDNKDARHVKTYEVVLKDKDFVEGPWSQNNLDNGAGLLIPVPMPLGGVIIIGEETIVYC
NGTIFKAIPIRPSITRAYGRVDADGSRYLLGDNAGLIHLLVITHERERVNGLKIEHLGET
TVASTISYLDNAVVYVGSSYGDSQLIKLNLQPDAKGSYVEVLEAYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGLWSLRSSINDPYDSLLVVS
FISETRVLAMNMDDELEESEIEGFSAEEQTLFCQNAIHDQLVQVTATVVRLVSSTTRQLL
HEWNAPSGYSVNVATANASQVLLATGGGHLVYLEIEKEKLIEVKHIQLEYEISCLDINPI
GENPNYTTVAAVGMWTDLTVRIFSLPSLELLTKENLGGEIIPRSILQCTFEGVSYLLCTL
GDGHLLNFLLDINTGGLSNRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELSIGTIDDIQKLHIRTIPLGQHARRICH
QEQSRTFSICCFKNCQISNEETEMHFIRLLDDQTFEFMSIFPLDSYEYGCSIISCSFSDD
NNAYYCVGTAYVLPEENEPSKGRILVFAVEDGKLQLIVEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWTLREDGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEG
AIEELARDYNANWMSAVEILDDDVFVGAENNYNLFTVRKNSDAASDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSEVGNIPTIIFGTINGVIGVIASLPHDQYVFFEKLQANLVKV
IKGVGGLSHEQWRSFNNEKRTADARNFLDGDLIESFLDLSRSRMDDIATSMGVTLEELCK
RVEELTRLH
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgagtgtgtggaactatgtggtgacggctcataagccgaccaacgtcactcactcatgc
gtcggcaacttcaccagtccccaagagctcaacctcatcattgccaaatgcacgcgcatt
gagattcatttgcttactgctcacgggctgcagcctatgttggacgtacctatatatgga
agaattgcaacacttgaactctttcgtcctcatggtgaaccccaggattttcttttcatt
tctacagagagatacaaattttgtgtccttcaatgggatccagatacatctgagcttatt
actagagctatgggagatgtttctgatcgaattggtcgtccaacagataatgggcagatt
ggtctaattgatcctgactgtagattaatcggtctacacctatatgatggactatttaag
gttataccatttgataataaaggacagttaaaggaagcttttaacatcaggcttgaagaa
cttcaagttctggacataaaatttctctatggatgttcaaggcctacaattgtagtccta
taccaggataataaggatgctcgacatgttaagacatatgaagttgtgctcaaggataag
gactttgttgagggcccatggtcacagaataatcttgacaacggggctggccttctgatt
cctgttcccatgccacttggtggtgtaataattataggggaggagactattgtttattgt
aatggtactatctttaaagcaatacctatcagaccatcgattacaagagcctatggaagg
gttgatgccgatgggtcccggtacttgcttggtgataatgctggccttatacatcttctt
gtcataacacatgagagggaaagggtaaatggcctgaaaattgagcacttgggagagaca
actgttgcatcgacaatatcatatcttgacaatgcagttgtatatgttggttcaagctat
ggtgattcacagcttataaaactgaatctgcaacctgatgcaaagggctcatatgttgaa
gttcttgaagcgtatgtcaacctgggccccattgtcgatttctgtgttgttgatctagaa
aggcagggtcagggtcaagttgttacttgctctggtgcttataaagatggctcccttcgg
atagttcgaaatggaatagggattaatgaacaggcatctgtagaactccagggtatcaaa
gggttatggtccctacgctcttctattaatgatccatatgacagtctcttggtggttagc
ttcatcagtgagactcgtgtccttgctatgaatatggatgatgagttggaagaatcagag
attgaagggttttctgcagaagaacaaactctgttttgtcaaaatgctatccatgatcag
cttgttcaggtaactgctactgttgttcgattggtaagttctaccacaaggcagttgttg
cacgaatggaatgcaccatcaggttactcggtcaatgttgccactgctaatgcctcacag
gttttgttggcaactggtggtggtcatcttgtgtatttagagattgagaaagaaaagttg
attgaagtaaaacatatacaattggaatatgagatatcttgccttgacataaatccaata
ggtgaaaatccaaattatactacagtagcagcagtcggaatgtggactgatttaactgtc
aggatattttcacttccaagcctagagctacttacaaaagaaaatttgggtggagagatc
attcctcgatcaattcttcagtgtacttttgaaggggtatcctaccttttgtgtaccctt
ggagatggtcacctcttaaactttcttctggatattaatactggtgggctatctaatagg
aagaaagtttctcttggtactcaacctatcacactcagaactttttcttcaaaggacacc
acacatgtgtttgcagcatcagatagacctacagtcatctacagcagtaacaagaagttg
ctttatagtaatgttaatttgaaagaagtcagtcacatgtgcccatttaattcagctgct
tttcctgacagtctagctatcgctaaggaaggcgaactatcaattggtacgatagatgat
attcaaaagcttcacattcgtacaattcctttggggcaacatgctcgtcgtatttgccat
caggaacaatcacgaacattttcaatttgttgtttcaagaactgccagattagtaatgag
gagactgaaatgcatttcattcgcctgttggatgatcaaacttttgagttcatgtcaatt
tttccgctcgactcttatgaatatggttgctccatcatcagctgttcattttcagatgat
aataatgcatactactgtgttggaactgcctatgttttgcctgaagaaaacgaacctagc
aaggggcgaatcctggtttttgcagtggaagatgggaagttgcaattaattgttgaaaaa
gaaactaagggtgcagtttactcactcaatgctttcaatggcaaattgctagctgccatt
aatcagaagatccaactatacaaatggacacttagagaagatggatcacgtgagttgcaa
actgaatgtggacaccatgggcatatacttgctctctatgtacaaactcgtggagacttc
attgtggttggtgacctgatgaaatctatatcgctgttgttatacaagcatgaggaaggt
gcaatagaggaactagctcgagattataatgcaaactggatgtctgctgttgagattctt
gatgatgacgtctttgttggtgctgagaacaactataacctttttacagtgcgcaaaaat
agtgatgccgcatcagatgaggaacggggacgtcttgaagttgttggggaataccacctt
ggagaatttgtcaaccgcttccgtcatggttctctggttatgcgtcttcctgactcggaa
gtaggcaacattcccactatcatatttggcacaatcaacggggtcattggtgttattgca
tctttgcctcatgaccaatatgttttctttgagaagctgcaagccaaccttgtgaaggta
ataaagggtgtgggtggccttagccatgagcagtggcgatctttcaacaatgagaagagg
acagcagatgccaggaacttcttggatggagacttgatcgagtctttccttgatctcagc
cgcagtcggatggatgatatagcaacctcgatgggagtgacattggaggagctttgcaag
agagtggaagagctgacgagactgcattga

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