Zingiber officinale (ginger): 121997103
Help
Entry
121997103 CDS
T08725
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121997103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121997103
03009 Ribosome biogenesis [BR:
zof03009
]
121997103
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121997103
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 related factors
121997103
Complex B
121997103
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121997103
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
Helicases
121997103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
OB_NTP_bind
ABC_tran
ResIII
AAA_30
T2SSE
AAA_7
DUF815
TrwB_AAD_bind
TsaE
AAA_24
NACHT
ATPase
AAA_29
PhoH
Motif
Other DBs
NCBI-GeneID:
121997103
NCBI-ProteinID:
XP_042407284
LinkDB
All DBs
Position
6A:98646497..98651456
Genome browser
AA seq
715 aa
AA seq
DB search
MSTERKRKVSLFDVVDETSVSAKLSKVNGSLSFKPPAVPSGINRWNGRPYSTRYYEILEK
RKALPVWQQKDEFLQVLKANQTVILVGETGSGKTTQIPQFVLEYEDVGKRSMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTMLKYLTDGMLLREAMADPLLERYK
VIVLDEAHERTLATDVLFGLLKEVLKNRSDLKLVVMSATLEAEKFQGYFSGAPLMKVPGR
LHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPQGDILVFLTGEEEIEDACRKLTKEINNL
GDQVGPVKVVPLYSTLPPLMQQKIFEPAPAPLEEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLISPISKASAHQRAGRAGRTQPGKCFRLYTEKSFKGDLH
EQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNL
TKLGEIMSEFPLDPQMAKMLVVSPEFNCSNEILSISAMLSVPNCFLRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNGEDSSWCYENFINHRTMKAADNVRQQLVRIMARFNMKL
CSTDFSSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVLHFVLQTMFNFPLVISS
EICLNLCYFCLIFRLIDIAPHYYDLSNFPSCEAKRMLERLYNNREREKADSKTRK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagagaggaagcggaaggtgagtctattcgacgtcgtggatgagacatccgta
tcggcaaagctttccaaggtcaacggttctttgtccttcaagccgccagcggtgccctct
gggatcaaccggtggaacggacggccctactcaacgagatactacgagatattggagaag
aggaaggccctgcctgtttggcagcagaaagatgagtttctgcaggtgttgaaggcgaac
caaactgtgattttggtcggagagactggcagtggtaaaacaactcagattccccaattt
gttttggaatatgaggatgtaggcaagcggtcaatggttgcttgcactcaacctcgacga
gttgctgcaatgtccgtttctcgtagagttgcagaggagatggatgtaacaataggagaa
gaagttggttatagcattcgatttgaagattgcagtagtcacaagactatgctgaagtac
ctaactgatggtatgcttttaagagaggcaatggctgatccactattggagagatataag
gtgatagttctagatgaggctcatgagcgaaccttggcaacagatgtgttgtttgggctt
ctgaaagaagtattgaaaaatagatcggatttgaaattagtggtaatgagtgctaccctc
gaggctgagaagttccagggttactttagtggggcacctttaatgaaggtacctggtagg
ttgcatccggtggaaattttctacacacaggatcctgaaagagattacttggaagctgct
attcgcactgttgtacagatacacatgtgtgaacctcagggtgacattcttgtttttctt
actggagaggaagaaatagaagatgcatgtaggaaattaacaaaagagattaataatttg
ggtgaccaagttggacctgtgaaagttgtgcctttgtattctaccctaccccctctgatg
cagcagaagatatttgaacctgcaccagcaccgctggaggaaggtgggccgcctggaagg
aagattgtggtgtcaacaaacattgcggaaacttcattgactattgatggcattgtttat
gtgattgatcctgggttctctaaacaaaaggtgtataacccacggatacgtgtagaatct
ttacttatctctccaatatcaaaggctagtgcacatcaaagggcagggcgtgctggtaga
acacaacctgggaaatgtttcagactatacactgagaaaagcttcaaaggtgacttacat
gaacaaacatatccagagattctccggtctaatttagcaaatacagttcttaccttgaag
aaactgggaattgatgatcttgtgcattttgactttatggatcctcctgctcctgaaaca
ttgatgcgagcactcgaggtcttaaactatcttggtgctcttgatgatgatggcaattta
actaagctaggtgagattatgagtgagtttcccttagaccctcagatggctaagatgttg
gttgttagtccagagttcaactgctccaatgaaattctctcaatatctgcaatgctctca
gtacccaattgctttctccggcctagggaggctcagaaagctgcagatgaagccaaagca
cggtttggtcacattgatggagatcacctcacgctgttgaatgtatatcatgcatacaag
caaaacggcgaggattcttcatggtgttatgagaattttataaaccataggactatgaag
gctgcagacaatgtgaggcagcagcttgtgcgcatcatggctaggttcaacatgaagcta
tgcagcacagacttcagcagccgagattattacatcaacatccgaaaagcaatgcttgca
gggtacttcatgcaggtagctcatctagagaggactggacattatctgacggttaaggac
aatcaggtacttcattttgtgcttcaaacaatgttcaactttccattggtgatctctagt
gaaatatgcctaaatctctgttacttttgtttgatattcaggttgattgacatagcccca
cactattatgatctgagtaatttcccctcgtgcgaggctaaacgaatgttggagagattg
tacaacaacagggagagggagaaggctgatagtaaaactaggaagtag
DBGET
integrated database retrieval system
