Zingiber officinale (ginger): 121997527
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Entry
121997527 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121997527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121997527
03036 Chromosome and associated proteins [BR:
zof03036
]
121997527
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121997527
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121997527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
121997527
NCBI-ProteinID:
XP_042407914
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Position
6A:113640535..113648726
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AA seq
1011 aa
AA seq
DB search
MFGSSSPFGQSSTSPFGAQPMFGQTSSSASNPFAPKPFGSPSPFGTQTGSSIFGGTSTGV
FGQQSTPAFGASSAPAFGTSMPAFGASSAPAFGSASSSFGGSSLFGQKPAFGSFGSSPSQ
SSPFGSTFQQTQPAFGSGLFGSTTPFGQSSQPAFGATTTPAFGSTGTPAFGATSTPAFGA
TTTPAFGSAATSLFGSTGTSFGVSSSPAFGSTATPSFGTPTTSIYGSSSTPAFGASSAPT
FSSPTVSAFGTSNTPFNFSSTPAFGQSTSAFGSTPFGASPSPFGGQSSPFGAQATTPSFG
SPGFGQSAFGAQPGGTRVASYSPTPEADGGTSSQPAGKLESISAMPVYKDKSHEELRWED
YQRGDKGGSNQSGQLSGATNFLAPSQPSPFGATGTFGQSSANPFSSTTPANPFALKSPSF
GSSGFGSTSTSLFSSPFSASSSSPFGSTSTASIFGASSSSTFGSSSSPSLFGGSAAPAFG
SSTSLFGNSLAGSNSAFGSGLAFGNNQASGLFQSSPSPFGQTSTAFGQPTSGTTSAFGSN
LFSTPSTGFGGSLFSSSTPSLFPSSTPVGYNMTPSALTPFQPAPALQTSSTFSFANFGQA
QPASSGGFGGMPNIFTQSTFGQPAAGQANVVMQPVPVANPFGTLPAMPQMSIGRVGSTPS
IQYGISSMPVSDKPIPARTSPLLVPRISSQRRIRLPPRKYSPKTDGPKLPFFADDETPST
PKADALFIPRENPRALVIRPVEEWPPRSTLEKGSISKYGTKSADENAVGMPSAPAYKELD
EGNHDEPVTENGQTRDHSSPIASPSKTIHKANGTTDDDHMQKATDSYVKISGHRAGKAAI
VYEHGPSIEALMPKLRRDDYYTIPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFYG
ETDVRVLDLESIVQFNNREVIVYNDDDKKPPVGQGLNKPAEVTLLNIKCIDKKTGEQLTE
GPRVERYKEMLARKVKEQGAEFIAYDPVKAEWKFKVKHFSRYRFVDMDLMV
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttccagcagtccttttggtcaatcttcaactagtccgtttggtgcccagcca
atgtttggtcaaacaagctctagtgctagtaatccatttgcgcctaaaccctttggaagt
ccgagtccttttggcacccagactgggagttctatttttggaggcacatctactggtgtc
tttggacaacaatcaacacctgcctttggtgcttcatcagctccggcttttgggacttcc
atgcctgcctttggggcatcatcagctcctgcatttggcagtgcttcgtcttcattcggt
ggatcttctttgtttgggcagaagccagcctttggatcatttggttcatctcccagccaa
tcaagtccatttggcagtacgtttcagcaaacacaaccagcatttgggagtggcctcttt
ggttccacaaccccatttggtcaatcaagtcaacctgcatttggtgctactaccactcca
gcttttggctctacaggaaccccagcatttggtgccacaagcactccagcatttggtgcc
acaactacaccagcatttggttcagcagcaacgtccctttttggttccacaggaacttcc
tttggggtttcaagttctccagcgtttggctcaacagcaacaccatcgtttggtactcca
accacctccatttatggttcttcaagtacgccagcatttggtgcatctagtgcccccacg
ttcagctctccaactgtttctgcttttggcacatcaaatactcctttcaattttagttcc
accccagcatttggtcagtcgacatctgcatttggtagtacaccttttggagcatcacca
tctccttttggtggtcagagctccccatttggagctcaggcaacaacaccatcctttggt
agcccaggttttggacaatcagcttttggggctcaacctggaggaacaagagttgcatca
tatagcccaacgcctgaggctgatggtggcactagtagtcagcctgctggcaagctggaa
tccataagtgccatgcctgtgtataaagacaagagccatgaggaattgaggtgggaggat
tatcaacgtggtgataaagggggatccaatcaatctggacagctttctggagcaacaaat
tttttggctccatctcaacccagtccttttggtgctacaggcacatttggtcaatcttct
gcaaaccctttttcttctaccacacctgcgaatccctttgctcttaaatctccaagtttt
ggttcttctggttttggttccacatctacatcacttttcagctccccattctctgcttct
tcatcaagtccatttggttcaacttctacagcttccatatttggtgcttccagcagttct
acatttggttcaagttcatcaccctcactttttggtgggtcagctgcacctgcttttgga
tcttctacatcactctttggcaattcattggcagggtcaaattctgcatttggatctggc
ctggcatttggcaataatcaagcttctgggctgttccagtcctcaccttcaccttttggg
caaacatcaactgcttttggacagccaactagtggaaccacttctgcttttggatcaaat
ctatttagcactccttctactggttttggtgggagtttattcagcagttcaactccttca
ctctttccttcaagtactccagttggatataatatgactccttcagcactgacacccttc
caaccagctccagcactccagacatcaagcacattctcatttgcaaattttggacaggca
caaccagcctcttctggtggctttggtggtatgcccaacatcttcactcaaagtaccttt
ggacagcctgctgctggccaggccaatgtggtcatgcaaccagttcctgttgcaaacccc
tttgggacacttccggcaatgcctcagatgtcaattggtcgtgtaggctctaccccctca
attcagtatggaatttcaagcatgccagtttctgataagcctattcctgcaaggacttca
ccattactagttccacgaatttcctctcagagaaggattagactgcctccaaggaagtac
tcccctaaaactgatggtccaaagttgccctttttcgctgatgatgaaacaccttctaca
ccaaaggcggatgcacttttcattcccagagagaatcctagggctctggttatacgtcca
gttgaggaatggcctcctcgaagtactctggaaaagggtagtatctccaagtatggaaca
aagtcagctgatgaaaatgctgtaggaatgccttctgctccagcttataaggaacttgat
gaaggtaatcatgatgaacctgtcactgagaatggacagacaagggatcattctagccca
attgcatcaccctctaaaactatacataaagcgaacggcacaactgatgatgatcatatg
caaaaagctacagactcttacgtgaaaatatccggacacagggcaggcaaggctgcaatt
gtgtatgagcacggtccaagcatagaagcattgatgcccaagctccgccgagatgactac
tatactatacctcgaatccaggagttggctgcaaaagagcgtgcagagccaggcttttgc
aggcgtgtcaaggattttgtggtcggccggcatggttacggcagcatcaagttttatggg
gagaccgatgtccgggtgctcgacctggagtcgattgtacaattcaacaaccgtgaagtg
atcgtttacaatgatgacgacaagaagcctccagtcgggcaagggctgaacaagcctgca
gaggtgacactcctcaacatcaaatgcattgacaagaagacaggagagcagttaacagag
ggcccaagggtggaaaggtacaaggagatgctggcgcggaaggtgaaggagcaaggggca
gaattcattgcctatgatcctgtcaaggcggagtggaagttcaaggtgaagcactttagc
cggtataggtttgtggacatggatctgatggtttga
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