Zingiber officinale (ginger): 121997624
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Entry
121997624 CDS
T08725
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121997624
09124 Replication and repair
03420 Nucleotide excision repair
121997624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
zof03051
]
121997624
03400 DNA repair and recombination proteins [BR:
zof03400
]
121997624
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
121997624
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121997624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
Rad60-SLD_2
Dsc3_N
UBA_RAD5A
CUE
TECR_N
UBA_3
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
121997624
NCBI-ProteinID:
XP_042408071
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Position
6A:complement(116197752..116205668)
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AA seq
392 aa
AA seq
DB search
MKIFVKTLKGTNFEIDVKPEDTVAEVKNFIETSQGKDVYPAEQQMLIHQGKILKDNTTLD
ENKVAENSFIVIMLSKTKPSSSGASSTAKAPASQAPAAPVPAVSPSQTSETTLPPTSASL
PVQINETTPASVPAAVTITPSNEADTYGQAASNLVAGSTLEQTIQQIIDMGGGTWDRDTV
VRALRAAYNNPERAVEYLYSGIPEQNEPAPVARQTASVLATNPPPAQAPQPVQPAVPSAL
PNANPLDLFPQGLPNLGSNVAGGDLDFLRNSPQFRALQALVQANPQILQPMLQELGKQNP
QLMRVIQEHQGEFLQLLNEPAEGSEGGGFLDQLATAAMPQAVSVTPEEREAIERLEAMGF
DRALVLQVFFACNKNEELAANYLLDHMHEFDD
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcttcgtcaagactttgaagggaaccaacttcgagatcgatgtcaagcccgag
gacacggttgctgaggtaaaaaattttattgagacatctcaagggaaagatgtttaccca
gctgagcagcaaatgcttatacatcaagggaaaatccttaaagacaatactactttggat
gagaataaagttgctgaaaatagttttattgtgattatgctcagtaagacgaagccttct
tctagtggagcatcatccactgcaaaagcacctgctagtcaggctcctgctgctccagtg
cctgctgtatctccatctcaaacatccgaaaccacgttgcctccgacatctgcaagttta
ccagttcaaattaatgaaactacaccagcatcagtaccagcagcggttaccatcacgccc
agcaatgaagcagacacatatggtcaagcagcatctaatcttgttgctggcagtaccttg
gagcaaacaatccagcaaattattgatatggggggaggaacttgggacagggacactgtt
gttcgtgccttacgtgctgcatataacaatcctgaaagggctgtcgaatatttatattcc
ggcattcctgaacaaaatgaacctgcaccagttgctcgccaaactgcaagtgtgctggca
accaatccaccacctgcccaggcaccacaaccagttcaacctgcagttccttcagccctt
cctaatgctaatcctctggatctctttcctcagggcctccctaatcttgggtccaatgtt
gctgggggcgaccttgactttttacgtaatagcccacagtttcgagccttgcaagctttg
gtgcaggcaaaccctcaaatcctacagcctatgctccaagagctagggaaacaaaaccct
cagcttatgagggtcatccaggaacatcaaggggagtttcttcaattgttaaatgagcct
gcagagggaagtgaggggggtggctttttagatcagttggctactgctgcaatgccacaa
gctgtgagtgttactccagaggagcgtgaagccattgaacggcttgaagccatgggcttc
gaccgtgcactcgtgctgcaggtcttttttgcatgcaacaagaacgaggagcttgctgct
aactaccttttggatcatatgcacgagtttgatgattga
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integrated database retrieval system
