Zingiber officinale (ginger): 121997871
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Entry
121997871 CDS
T08725
Name
(RefSeq) serine/threonine-protein phosphatase PP1-like
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121997871
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
121997871
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121997871
03019 Messenger RNA biogenesis [BR:
zof03019
]
121997871
03041 Spliceosome [BR:
zof03041
]
121997871
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
121997871
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
121997871
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121997871
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121997871
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121997871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
121997871
NCBI-ProteinID:
XP_042408468
LinkDB
All DBs
Position
6A:complement(123492157..123498051)
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AA seq
320 aa
AA seq
DB search
MSMDLVLLDDIIRRLLEAKGGRTVKNAQLTDAEIRQLCVASKEIFVGQPNLLELEAPIKI
CGDVHGQYIDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYPENFFLL
RGNHESASINRIYGFYDECKRRYNVRLWKVFTDCFNCLPVAALIDGKILCMHGGLSPELE
SLDQIRNIARPVDVPDQGLLCDLLWSDPDRGIDGWGENDRGVSYTFGHDKVTEFLQKHDL
DLICRAHQVVEDGFEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKPADK
KKGFGNNLLKPGTPPRKLAG
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggatctggttttgttggacgatatcatacggcgacttctggaggccaagggc
gggaggactgttaagaatgcgcagctgactgatgcggagatccggcaactgtgcgtcgcc
tccaaggagatctttgtcggtcagcccaatcttttggagctcgaggcccccatcaagatc
tgtggagatgttcacggccaatatattgatcttcttaggctttttgaatacggtgggtac
ccaccggaagcaaattatctgttccttggggactatgttgatcgtggtaagcagagcatc
gaaaccatatgcctgctccttgcatacaagatcaaatatccagaaaacttctttcttcta
cgggggaatcatgaatctgcatccattaaccgtatatatggcttttatgatgagtgcaag
agaagatataatgttcgtttgtggaaagtttttacagattgttttaactgccttccagtt
gctgcgcttattgatggtaagatactttgcatgcatgggggtctatctcctgagctagag
agtttagatcagattagaaatattgctcgtccagtggatgtaccagaccaaggtctcctt
tgtgatttgctatggtcagaccctgacagaggtatagatggttggggtgaaaatgataga
ggtgtttcttatacttttggacatgacaaggtcactgagtttcttcaaaagcatgatttg
gaccttatctgccgagcccaccaggttgtggaagatggctttgagttctttgcaaaacgc
cagctagtgacaatattctctgctccaaactactgtggtgaatttgataatgctggtgct
atgatgagtgtagatgacactttgacttgctcatttcagattcttaaaccagctgacaag
aaaaaagggtttggaaataatttgttaaaaccaggaacacctcccagaaagctagcaggt
tga
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