Zingiber officinale (ginger): 121997967
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Entry
121997967 CDS
T08725
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
121997967
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121997967
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121997967
Membrane trafficking [BR:
zof04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
121997967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Syndetin_C
EXOC6_Sec15_N
DUF7791
Motif
Other DBs
NCBI-GeneID:
121997967
NCBI-ProteinID:
XP_042408605
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All DBs
Position
6A:complement(126503292..126526622)
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AA seq
1018 aa
AA seq
DB search
MEAPLPSRLRDLASNGRSSSASSRSHDLDSPSSSAGSSAVSHSLASILNNPHAGRSDASW
SLWWSSSSAAYPDLTAPFAPSVSFPEVARADFLPYISSVADAYSRFEDILSHRSKESAAA
ADDASGGDGEVRGQGEALVACLREVPSLFFKEDFALEEGATFKAACSFSPSGEENMALQE
RLTQYLDVVEMHLVREISLRSDSFYEAQGQLQGLNGQIVEACVRIRELKETIRILTGDLV
GSARKVQELNATRGNLLALHQKLTVILYVSQALGAMKLLVAAADCAGALDVIDDLQQLLD
TDELVGLHCFRHLRDQLSSALDSINSILSAEFMRASIPDGKVFDSMILSRLVSKASDLMK
GVEDQVKLEDEESSNLQDCLLPLIIGLLRTAKLPSVLRLYRDTLITEMKASIKATVAASL
PVLLARPMDSDLVTSDRVGDSDGGSLSLASKLRSLSPESFVLLLKAIYNVVQAHLTRAAE
VKRIVELIMGNVDGCYAVEPSVAAVAHGTAEGSQENNGHLVPYVSHSLPRNPPKISLVQG
KANDSSPSTSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPKLRLQEFLRIYD
ITQNFIAATEKLGGRLGYSIRGTLQSQSKAFVDYQHDCRMTKIKAVLDQETWVAVDVPDE
FQAIVILLSSADVSINNSELLSNNPNSSTIETTVVSNQDHTIQKEFDQAADHDKQTSSPL
SAMVNQNTIVESTPKQNSNASSNEPGRSASQMLVYQGVGYHMVNCGLILLKMLSEYVDIS
KFLPSLSSEVVHRVVEILKLFNMRTCQLVLGAGAMQVSGLKSITSKHLALASQIVSFVHA
IIPEIQRVLFEKVPEARKALLAVEIERVAQDFKVHRDEIHMKLIQIMRERLLANLRKLPQ
IIESWNAPEDNDLQPSQIARSITKEVTYLHRILSQILLEADVHAIFRQVVHIFHSHISEA
FSKLELSTPQAKNRLCRDIQHILGCIRKLPSDSLEKASAPNFGLLDELLEEKYGTKVG
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgccactgccttcccgcctccgagatctggcgtccaacggacgctccagctca
gcctccagccgatcccacgatctcgattctccttcctcatccgccggcagcagcgccgtc
agtcacagccttgcctccatccttaacaacccccatgctggccgctccgatgcctcttgg
tctctctggtggtcctcctcttctgccgcctaccccgacctcactgctccctttgctccg
tccgtctcgttccccgaggtcgcccgcgccgactttcttccctacatttcgtctgtcgct
gatgcatattcgcggttcgaggacatcctcagccatagatcaaaggagagcgccgctgct
gccgacgacgcttctggtggcgacggagaggtccgagggcaaggggaggctctggtggct
tgtctccgggaggttccgtcgttgtttttcaaagaggacttcgcgttggaggagggcgcc
acgtttaaggcagcatgctccttctcaccgtcgggtgaagagaacatggccctccaagag
agattgacacaatacctggatgtcgttgagatgcatttggtgagggagatctcactgcga
tcggattcgttctatgaagctcagggtcagcttcagggtctgaatgggcagatcgtggaa
gcatgtgtgaggattcgggaactgaaggaaactatccggatcctaactggagatcttgtt
gggtcagccagaaaagtgcaagagctgaatgccacccgtggaaatctattagcactgcac
cagaagctcactgtcatcctctacgttagccaagcactgggggcaatgaaactgcttgtt
gcagcagcagattgtgctggtgctttagacgtgatagatgatttgcagcagttgctggat
actgatgagcttgttggccttcattgttttcggcatcttcgagatcagttgtcaagtgcc
ttggattcgataaatagcattctttcagcagaattcatgcgtgcttccatacctgatggc
aaggtttttgattcaatgattttatcaagattagtgagtaaggctagtgatcttatgaaa
ggagtagaggaccaagtaaagttagaggatgaggaaagctctaaccttcaagattgtctt
cttccactcatcatcggtctactaagaacagcaaagcttccgtctgtgttgaggctgtac
cgtgatacacttattactgaaatgaaagcttcaattaaagctacagtcgctgcttctctt
ccagttctattagctcgaccaatggattctgatctggttaccagcgacagagttggtgat
tcagatggtggaagtttgtcccttgcaagcaagttgcggagtctatctcctgaaagcttt
gttcttcttttgaaggctatttacaacgttgtgcaggcacatttgacgcgggctgcagaa
gttaaaaggattgttgagctgattatgggaaatgttgatggttgttatgctgttgaaccc
agtgttgctgcagttgcacatggtactgcagaaggttcccaagagaacaatggccatctt
gttccatatgtttctcattcccttcccagaaatcctcctaaaatctcattggttcaagga
aaagctaatgattcaagtccaagcacatccaaaaattttcgtgctgatgtactgagagaa
aacacagaagctgtatttgctgcttgtgatgctgctcatggaagatgggcaaaactactt
ggtgtccgtgccctccttcatcccaaattaagacttcaagaattcttacgcatttatgac
ataacccagaactttatagctgctacagagaagcttggtggaagattgggttatagtatt
cgtggtactcttcagtcgcagtcaaaggcatttgttgactatcagcatgattgtcgtatg
accaaaatcaaggcagtcctcgatcaggaaacttgggttgctgtggatgtccctgatgaa
ttccaggccatagttatacttttgtcttctgctgatgtatcaataaacaatagtgaactg
ttgtcaaacaatcccaattctagcaccattgaaacaactgttgtttctaaccaagaccat
actattcagaaagaatttgatcaagctgctgatcatgataaacaaacttcttccccctta
tcagctatggtaaaccaaaacaccattgtagagtctacacctaaacagaatagcaatgct
agttcaaatgaacctggaagatcagcttctcaaatgctcgtgtatcaaggtgttggctat
cacatggtaaactgtggcttaatattgttaaagatgctatcagagtatgttgatattagt
aaattcctgccatcattgtcatctgaagtggttcatcgtgtagtggaaatattgaagcta
ttcaacatgaggacttgtcagcttgttcttggagctggcgcaatgcaggtatcaggttta
aagtccataacttctaagcatttagctttggcaagccagattgtcagttttgttcatgcg
ataataccagaaatacaacgtgttcttttcgagaaagtacctgaggcccgcaaagcattg
cttgcagtagagatagaaagagtggcacaggacttcaaggttcatcgagatgaaattcac
atgaagctgatacagataatgagagaaaggctgcttgcaaatctacgcaaactgcctcag
attattgagagttggaatgcgcctgaggataatgatttacaaccgagtcagattgctcga
tccataacaaaggaagttacttatcttcatcgcatcttatcacaaattcttcttgaggct
gatgttcatgctatcttcaggcaagtggttcatatttttcattcccacatttcagaagca
ttttcaaaattggagctcagcactccccaagcaaaaaacagactttgccgtgacattcag
catattcttggttgtatccgcaaattgccttctgatagtttggaaaaagcaagtgcgcct
aattttggtcttcttgatgagttgttggaagagaaatatggaacaaaagtaggataa
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