Zingiber officinale (ginger): 121998253
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Entry
121998253 CDS
T08725
Name
(RefSeq) probable pectate lyase 5 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121998253
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121998253
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121998253
NCBI-ProteinID:
XP_042409006
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Position
6A:136202793..136226511
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AA seq
490 aa
AA seq
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MLRRHLYCLSTHILLLFCSFPFFSAALPFPNSSVRTHAHPDPDFVAREVQRQVAYSNRRA
LLAAGDKDQCLTGNPIDDCWRCSGSDWREDRQRLAECGIGFGRDALGGKGGPIYVVTDPS
DRDPVNPAPGTLRYGAIQDGPLWITFARDMTIRLNEELLVNSFKTIDGRGAVVHIAGGAC
ITLQYVSNVIIHNLHIHHCVSAGEANVRASPTHFGWRTRSDGDGISIYSGRKIWVDHCAL
SYCADGLIDAIMGSTAITISNSYFSHHDDVMLLGHSDDYLPDSGMQVTIAFNRFGEELVQ
RMPRCRRGYFHVVNNDFTSWEMYAIGGSANPTVNSQGNRYIAPANSNAKEVTKRVDTEEK
DWSKWNWRTEGDVMANGAFFVASGAGAGVEAKYAMAESVDPKSAALIDQLTMNAGVLGGA
RDNSGGAGSSSVSYGSADGDKGAGSGEQVLGYGSFGMVFSSGAPTPLTYCITPHFCSSFV
IALIALRLHR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctccgccgccacctctactgcctttctacccacattctcctcctcttctgctcgttc
cccttcttctccgccgcgctgccctttcccaactcctctgtccgcactcacgcccacccc
gatcccgatttcgtcgcccgtgaagtccaaaggcaggtggcgtactccaaccgccgcgcg
ctcctggcagccggcgacaaggaccagtgcctcacggggaacccgatcgacgactgctgg
cggtgctccggcagtgactggcgggaggaccggcagaggctggctgagtgtggcatcggg
ttcggccgtgacgcacttggcggcaagggcgggccgatctatgttgtgacggacccgtcg
gaccgtgacccggtgaaccctgctccaggcactctccgctacggcgccatccaggatggc
cccctctggataaccttcgcccgcgatatgactatccgtctcaatgaggagcttctggtg
aacagcttcaagactatcgacggacgcggtgctgtagtccacattgccggcggcgcctgt
atcaccctccagtatgtatccaacgtcattatccacaacctgcacatccaccactgtgtc
tcagcgggcgaggccaacgtgcgcgcctcgccaacgcatttcggctggcggacgcgctcc
gacggcgacggcatctccatctacagcggccgcaagatctgggtggaccactgcgcgctg
tcctattgcgccgatggcctgatcgatgccatcatgggctccacggcgatcacgatctcc
aacagctacttctctcaccatgacgatgttatgctgctcggtcacagcgacgactaccta
ccggactcggggatgcaggtgaccatcgcgttcaaccgcttcggggaggagctcgtgcag
cggatgccgcgctgccgccgaggctacttccacgtggtcaacaacgacttcacctcgtgg
gagatgtacgccatcggcggcagcgccaacccaaccgttaacagccagggaaaccgctac
atcgctccggccaactcgaacgccaaagaggtgacgaagcgggtggacacggaggagaag
gattggagcaagtggaattggaggacggagggggacgtgatggcgaacggagcgttcttc
gtggcgtcgggggccggagcgggggtggaggctaagtacgccatggcagagagcgtggac
cctaagtctgccgcgctcatcgaccagctcactatgaacgccggcgtccttggcggggcc
agagacaacagtggtggtgcagggtcctccagtgtcagctatggctctgcagacggtgat
aaaggtgctggtagtggcgaacaagttcttggctatgggtccttcggaatggtgttctcc
agtggtgcaccaacgcctctcacttactgcattacacctcacttctgttcctctttcgtt
attgctctcatcgcactccgtttgcatcgatag
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