KEGG   Zingiber officinale (ginger): 121998316
Entry
121998316         CDS       T08725                                 
Name
(RefSeq) histone deacetylase 1-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03082  ATP-dependent chromatin remodeling
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121998316
   03083 Polycomb repressive complex
    121998316
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zof03036]
    121998316
Enzymes [BR:zof01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     121998316
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     121998316
   HDAC complexes
    Sin3A-HDAC complex
     121998316
    BRAF-HDAC complex
     121998316
    REST complex
     121998316
    SHIP complex
     121998316
    MiDAC complex
     121998316
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121998316
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121998316
  Chromatin remodeling factors
   NuRD complex
    121998316
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 121998316
NCBI-ProteinID: XP_042409108
LinkDB
Position
6A:139000955..139007799
AA seq 516 aa
MEIGGGNSLPGIGPAAKKRKVCYFYDPEIGNYYYGQGHPMKPHRMRMTHALLAQYGLLGH
MQVYKPNPARDRDLCRFHADDYVTFLRSVTPETQQEQIRALKRFNVGEDCPVFDGLYSFC
QAYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKRHERVL
YVDIDIHHGDGVEEAFYSTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDG
IDDESYQSLFKPIMGKVMEVYQPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSF
NVPLLLLGGGGYTIRNVARCWCYETGVALGLEIDDKMPQNEYYEYFGPDYTLHVAPSNME
NKNSYQQLNDIRSRLLDNLSRIQHAPSVQFQERPPDTEIPEPDEDHADPEVRHDPDSDME
VDDSKHPDESVRKPFPINIQNVRIKKETKEGDVKYQEDQKITDHSKAVEAVVEEISGFKA
SDVGSTAIDEPRSIKMELESKIKLSDALESAGKHQF
NT seq 1551 nt   +upstreamnt  +downstreamnt
atggagatcggtggcggcaactccctgccgggaatcggtccggcggcgaagaagcggaag
gtgtgttacttttacgacccggagatcgggaactattactacgggcaggggcatccgatg
aagccgcatcggatgcggatgacccacgcgctgctcgcccagtacggcctcctcggccac
atgcaggtgtacaagcccaaccctgcccgcgaccgcgacctctgccgtttccacgccgac
gactacgtcaccttcctacgctccgtcacccccgagactcaacaggagcagatccgcgcc
ctcaagcgcttcaatgtcggcgaggactgccccgtcttcgacggcctttactccttttgt
caggcctacgcgggcggctcagttggtggcgctgtcaaactcaaccatgggcacgacatt
gccatcaactgggctggcggccttcaccatgccaaaaaatgcgaggcctcaggtttctgc
tacgttaatgacatcgtgctagccatcctcgagctcctcaagcgccatgagcgtgtatta
tatgtggacattgatattcaccatggagatggtgtggaggaggcattctattccacagac
agagtcatgacagtttcatttcataaatttggagactactttcctggaacaggagacata
cgtgatattggatatgggaaagggaaatactactcactcaatgtcccattagatgatggg
atagatgatgagagctatcaatctctcttcaaacctatcatgggaaaagttatggaagtt
taccaacctggcgccgtggtccttcagtgtggtgctgactcgttatccggagacaggttg
ggatgttttaacctttccatcaaaggtcatgccgaatgtgtgaaatacatgagatctttt
aatgtgccactgttgttacttggtggtggtggatatactatcaggaatgttgctcgatgt
tggtgctatgagactggagttgcccttgggttagaaattgatgacaagatgcctcaaaat
gaatactacgagtattttggaccggattatactcttcatgttgcgccaagtaatatggaa
aacaaaaattcgtatcagcaattgaatgatattagatcaaggcttctagacaatctctca
aggattcaacatgctcctagtgtccagtttcaagaacgacctcctgatacagagattcct
gagcctgatgaagatcatgcagatccagaggtaaggcatgatcctgattcagacatggag
gttgatgactccaagcatccagatgagtcagtaagaaaaccgtttcctattaatatccag
aatgtgagaatcaagaaggaaaccaaggaaggtgatgtaaaatatcaggaagatcaaaaa
attacagatcattcgaaagctgtagaagcagttgtcgaagaaatctctggtttcaaggct
tctgatgttggatccacggcgatagatgaacccaggagtataaagatggaattggagagc
aagattaagttgtccgatgcactagaaagtgcaggcaaacaccagttttag

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