KEGG   Zingiber officinale (ginger): 121998489
Entry
121998489         CDS       T08725                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121998489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    121998489
   03036 Chromosome and associated proteins [BR:zof03036]
    121998489
Spliceosome [BR:zof03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    121998489
 Complex B
    121998489
 Complex C
   U2 SnRNP specific factors
    121998489
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    121998489
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd UME Adaptin_N
Other DBs
NCBI-GeneID: 121998489
NCBI-ProteinID: XP_042409363
LinkDB
Position
6A:144934588..144940178
AA seq 1270 aa
MDNLDAEIAKAQEERRKMEDVAMLTSVTFDADLYGAGPDRFEGYERSIAVNDDEEEQDGD
SRELARRMASYTGPKSLKEIPRAGADGDEDSGFKKPQRIIDREDDYRRRRLQRIISPDRN
DPFASGEATPDPAVRTYADVMREQALQRQKEDILKEIAKKKEEEKSKAAAEPAPAAQKRR
NRWDQSQEPDDGPVKKAKPSSVSSDWDAPDSTPGIGRWDATPTPGRVADATPSVSRRNRW
DETPTPGRLADADATPTAGGVTPGATPAGMTWDATPKLSGLATPTPKRQRSRWDETPATM
GSATPLPGAATPAAAFTPGVTPVGGVDLATPTPGAINLRGAMTPEQFNLLRWERDIEERN
RPLTDEELDAMFPQEGYKILNPPASYVPIRTPARKLLATPTPMGTPLYSIPEENRGQQFD
VPKEAPGGLPFMKQEDYQYFGALLNEEEEEQLSPEEQKERKIMKLLLKVKNGTPPQRKTA
LRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKIL
VVIEPLLIDEDYYARAEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVV
ASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVEIIEHGLS
DENQKVRTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIP
LMDAVYASYYTKEVMIILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFF
RNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKV
VANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQKVKPYLPQICG
TIKWRLNNKSAKVRQQAADLISRIAIIMKQCKEEQLMGHLGVVLYEYLGEEYPEVLGSIL
GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPARE
WMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTV
AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLE
DALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAV
EGMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPTLEDDGNNL
YSRPELAMFV
NT seq 3813 nt   +upstreamnt  +downstreamnt
atggataacttggatgcggagatcgctaaggctcaagaggaacgacggaagatggaagat
gtcgccatgctcacctccgtcaccttcgacgccgacctttatggtgcgggtcctgaccgt
ttcgagggctacgagcgctctatcgctgttaacgacgatgaggaggagcaggacggtgac
agccgcgagctagcccgtcggatggcctcttacaccggccctaagtctcttaaggagatc
cccagggcaggggcagatggcgacgaggattctggatttaagaagccccagaggatcatc
gaccgggaggatgactaccggcgccggagacttcagaggatcatttcgcctgataggaac
gatccgtttgcttctggggaagctacgccggaccctgcggttaggacatatgctgacgtg
atgagggaacaggccttgcagcgtcagaaggaggatattttgaaggagatagctaagaag
aaggaggaggagaagagcaaggctgctgctgagccagcccctgcagcgcaaaagaggagg
aacaggtgggaccagtcgcaggagcctgatgacggcccggttaagaaggcaaagcccagc
tcggtgtcttcggattgggatgctcccgattccacccctgggatcgggcggtgggatgca
acaccgacaccagggagggttgcagatgcgacaccctccgtctctcgcagaaacagatgg
gatgaaactcctacacccgggagacttgctgacgctgatgcaactcctaccgcaggtggt
gtcacccctggtgctacgccagctggtatgacatgggatgctacccccaagctttctggg
cttgcaacaccaacgcctaagcgccaaagatcaagatgggatgagactcctgctacgatg
ggcagtgccacaccattaccgggcgctgcgactcctgctgctgctttcacccctggtgtt
actcctgttggcggtgttgatcttgcgactccgactcctggtgcaataaaccttcgaggt
gccatgactccggaacagtttaatctgttgcggtgggaaagggacattgaagagagaaat
agaccgttgacagatgaggagctggatgctatgttcccacaggaagggtacaagatattg
aatccgcctgcatcctatgttcccatcaggactcccgcaaggaagctcttagctactcct
actccaatgggtacgccactttattcaataccagaagagaaccgtgggcaacagtttgat
gtcccaaaggaggcacctgggggtttgccgttcatgaaacaagaggattaccaatacttt
ggggctctactgaatgaagaagaggaggaacagctttctcctgaagagcagaaggaaaga
aagatcatgaagctattgctgaaggtgaagaatggtactccaccacagaggaaaacagcc
ttgcgacaacttacggataaggccagagagtttggagctggtccactgttcaacaagatc
ctgcctttgctcatgcagccaactcttgaagatcaagagcgccatcttttggtaaaagtt
attgacagggttctatataagttggatgagctggtcaggccctttgttcataagattctt
gtggttatagagcctcttctaattgatgaggattattatgcccgtgctgaaggaagagag
ataatctccaacctcagtaaagcagctggtcttgcaactatgattgctgccatgaggcct
gatattgataacattgatgagtatgtgaggaatacaacagcacgagctttcagtgtggtg
gcgtctgctttgggaattcctgctttgttaccatttctgaaggctgtttgtcagagtaag
aaatcttggcaagcacggcacactgggattaagattgtccagcagattgctattctcatg
ggatgtgctgtgttgccacatcttaggtctctagtggaaattatagagcatggtcttagt
gatgagaaccaaaaagtgagaaccattactgccttgtcgctagcagcacttgcagaagca
tctgctccatatggtattgaaagctttgattcagtgttgaaacctttatggaagggtatc
agatctcatcgtggaaaggttcttgctgccttcctgaaggcaattggttttattatccct
ctgatggatgctgtttatgcaagttactatactaaagaagtcatgattatccttatccgt
gagttccaatcacctgatgaagaaatgaagaagattgtgctaaaagttgtcaagcagtgt
gtcagtacagaaggggtagaggctgactatatccgcaatgatattcttcctgagtttttc
aggaatttctgggttaggaggatggcacttgaccgcaggaactacaagcagcttgtggag
acaactgtagaaattgcaaataaggttggtgtggcagatattgtaggaaggatagtggag
gatctcaaagatgagagtgaaccttataggcgcatggtgatggagacaattgaaaaggtg
gtggctaacctaggagcatcagatattgatgctagattagaagaacttcttatagatggg
atcttgtatgccttccaggagcagacgagtgatgatgcaaatgttatgcttaatggattt
ggtgcagtggttaatgctttaggccagaaggtcaagccttatcttccccagatttgtggt
accatcaagtggcgtttgaacaacaagagtgccaaagttaggcagcaagctgcagacctg
atatcacggattgccattatcatgaagcagtgcaaggaagagcaactgatgggtcatctg
ggtgttgtcctgtatgagtatctgggagaagaataccctgaagtcttaggttccatcctg
ggagcacttaaagctatagtcaatgtcattggtatgactaagatgacaccacctattaag
gatctacttcctcgtctgacaccaatcttgaagaacagacatgagaaggtgcaggagaat
tgcattgaccttgttggcagaattgcagatcgaggagcagaatttgtgccagctagggag
tggatgaggatttgttttgagcttcttgagatgttgaaggctcacaagaaggggatcaga
agagctactgttaacacttttggttatattgccaaggctattgggccacaagatgttctt
gcaacacttttgaacaatttgaaagtgcaagagcgtcaaaatcgtgtatgcactaccgtg
gctattgcgatagttgctgaaacatgctctccttttactgttctgccagctcttatgaat
gagtaccgtgttcctgagttgaatgtacagaatggtgttcttaaatctctctcattcctc
tttgagtacataggtgagatgggtaaagactatatatatgctgttacaccactgttggag
gatgctttgatggacagggatctggttcatcgtcagactgctgcatctgctgttaagcac
atggctttgggagttgctggtttgggttgtgaggatgcacttgttcatttgcttaattat
gtctggcccaacatttttgagacttctcctcatgttattaatgctgtaatggaagctgtt
gaagggatgagagttgcacttggtgcagctgttattctgaattattgccttcagggctta
tttcaccctgcaaggaaagttagggaggtctactggaaaatctacaattcactttacatt
ggatcccaagatgctttagtagctgcttatcccacactagaagatgacggaaataatttg
tatagccgacccgaacttgcaatgtttgtctga

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