Zingiber officinale (ginger): 121998493
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Entry
121998493 CDS
T08725
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121998493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121998493
Spliceosome [BR:
zof03041
]
Complex B
Other components
Prp19-related factors
121998493
Complex C
121998493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
RRM_3
zf-CCCH_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121998493
NCBI-ProteinID:
XP_042409374
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All DBs
Position
6A:144949858..144954942
Genome browser
AA seq
473 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYIRMTKADYDKECKICKRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCILDLEYGLPVQARDTALAINSNDAIPKSDVNREYFAE
EHDRKARAGIDYDSSYGKMHPNDTILKLQRTTPYYKRNRAHVCSFYMRGECTRGAECPYR
HEMPETGELAQQNIKDRYYGVNDPVAMKLLNKAGEMPSLNPPDDESIKTLYVGGLDARVS
EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREAAERAAEELANKLVIKGVRLKLMWGR
PQAPKPEGEASDDDAARQGVAFHAGMLPRSVISQQQSNLQPLPPGTENHMQPPPNYFNIP
APPQATRLFYPSMDPQRMGAVIPSQEGGDNKGGSEQRPPIHQGHAYPMVPSHQQGHFPPH
YPPYGYMAPPPNYQQQQQQQQYAPYPPMTAASRPPAPPLPSAGQQYPQGPPGP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgcgggacgcccaggccgatggatgggaacgttccgatttcccc
atcatctgcgagtcctgcctcggtgacaacccttacattcgaatgacaaaggctgattat
gacaaggaatgcaagatctgtaagcggccatttactgtcttcagatggaggccaggacga
gatgcaagatacaagaaaactgaaatttgtcagacttgctgtaagctgaagaatgtctgt
caggtatgcattctagatctcgaatatgggttgccagttcaggctcgggacaccgcactt
gctatcaactctaatgatgccattccaaagagtgatgtgaatagagagtactttgctgaa
gaacatgatcgcaaggccagagctggcatagattatgattcgtcatatggtaaaatgcat
ccaaatgatactattctaaaacttcaaaggacaactccatattacaaaagaaatcgagcc
catgtttgtagtttctatatgcgtggagaatgtactcgtggtgctgaatgtccataccga
catgaaatgcctgaaaccggtgaattagctcaacaaaacataaaagatagatattatgga
gtgaatgatcctgttgctatgaaacttctaaacaaggctggggagatgccctctctaaat
cctcctgatgatgaaagtataaagaccctttatgtcggtggacttgatgcccgagtctcc
gaacaggatctgagggataacttctatgcccatggtgagatagaatccattaggatggtg
cttcagagagcatgtgcatttgtaacttacaccacaagggaagcagctgaaagagctgca
gaggagctcgccaacaagctggtcattaaaggtgttcgactgaagcttatgtgggggcgg
cctcaggccccaaaaccagagggagaagcatcggatgatgatgctgcaaggcaaggagtt
gcatttcatgcagggatgcttccaaggtccgttatatctcagcaacagagcaacctgcag
cctcttccgcctggaactgagaatcatatgcagccgccacctaactatttcaacattcct
gcaccaccgcaagctacacggttgttctacccttccatggatcctcagaggatgggtgct
gtaatcccctcacaggagggaggcgataacaagggtggatcggagcagcgacctcctatt
catcagggacacgcttatcccatggttccttcacatcaacaagggcatttcccaccccat
tacccaccatacggctacatggcgccgccaccaaattaccagcagcagcagcagcagcag
caatatgcaccttacccaccaatgacagcggcttcacggccaccagcgccgccactgcca
tccgcaggacagcagtatcctcaaggcccacctggaccatag
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