Zingiber officinale (ginger): 121998667
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Entry
121998667 CDS
T08725
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121998667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121998667
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121998667
mRNA cycle factors
Common to processing body (P body) and stress granule
121998667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
DUF6025
Motif
Other DBs
NCBI-GeneID:
121998667
NCBI-ProteinID:
XP_042409604
LinkDB
All DBs
Position
6A:148685905..148693539
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AA seq
963 aa
AA seq
DB search
MMTVPMDSSLSSWEFAQRLYDKNVELENGLRLSAKSKVPSDPNAWLQMRENYEAIILEDR
DFSEKKDIEFVLWQLHYRRIEEFRQHINAAVSAGTGSNLPAGRKVLVHPDKIKKIHYVFR
SFLTEATGFYHDLILKIRAKYGLPLSYFNEGIETEIVSMKDEKNLSEMQKGLVSCHRCLI
YLGDLARYKGLYGEGDSVSRDFAAASSYYLQAVSLYPSSGNPHHQLAILASYSADELLSV
YRYFRSLAVEIPFSTARDNLIIAFEKNRQSFSQLPGNMKVASGRKMRMRSTGRGRGRGDL
KLMQKDTKIETSHIKDQKLTKSELFKAFSIRFVRLHGILFTRTSLETFGEVFGSVINDLI
VLLSSGPQEELNFGLTGAENSLTMLRLISIMIFTVHNVKRESENQSYAEILQRRVLLQNA
FTSAFEFAGYILKRCVELQDSASSYLLPGILLFIEWLACHQDIAASSDMEEKEEGARLFF
WNHCISFMNKLIETGLASIDGDDDEACFFNMSRYDGEETGNRLALWEDFELRGFLPLVPA
QLILDFSRKHPLMNDGGMKDSVSRVQRILAAGRSLSNIVYIEQKKLYIDPNRKKFILSSE
PPVFDGNMDPTFQGLLDSGVKKQGSEIKDVADLWVAQRTSSLGVAEIKDHIYMGGEDDEE
EIVFKPPTSEKYADAKLTAFNLINPVQEYFLSDQAMPARHLSPNFGQINVPALPNNEWFS
KQEACLSNGIKNMNITENGHLNKQVLQESSSMVQPQPFSHVLSTSVNLDADNTFSNQITA
ADVVLPSAFDTILPSGAISDGLAMKPSGFPSLKKSPVSRPVRYAGPPPGFSHISSRQQNG
GIPNSCTNDQLHEIDDYSWLDTSRSSTKSMGVDNSFDKITHRVPYINTSNTTPFATVSTF
PFPGKQVSNVQSEIVNGRRWHDFQLFEQLKPFNVQQNQHSNPQQTLLPEQYKAQSLWSNQ
YFV
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttccgatggatagttctctttcatcatgggagtttgcacagcggctttat
gataagaatgttgaattggagaatggactacggctatctgcaaagtcaaaagtaccttca
gacccaaatgcttggcttcaaatgcgagaaaactatgaggccataattcttgaagatcgg
gatttttctgagaagaaagacatagagtttgtcctatggcaactgcattacagaagaatc
gaggaatttaggcagcatattaatgctgcagtctcggctggtacaggatcaaatctacca
gcaggtaggaaggtccttgttcaccctgataaaattaagaaaatccactatgttttcaga
agcttcctgacagaagctactggattttaccatgatctcatattgaagattagagcaaag
tatgggctgccattgagctactttaatgagggaattgaaactgaaattgtttcgatgaaa
gatgaaaagaatttgtctgagatgcagaaagggcttgtgtcttgtcaccggtgtctgata
tatttgggagaccttgcgcgttataaaggactatatggagaaggggactctgttagtcgt
gattttgcagctgcttcaagttactatttgcaggcagtttctctctacccttcaagtggc
aacccacatcatcagctggcaatacttgcttcctattcagctgatgaactgttgtcagta
taccgctacttcagaagtttggcagttgaaattcccttttcgactgcaagagataacttg
ataattgcttttgagaagaatcgtcaaagtttctctcagctacctggcaacatgaaggtt
gcttcaggccgaaaaatgcgtatgcgctcaactggtcgaggtagaggaagaggggatcta
aagctcatgcaaaaagatactaaaattgaaacttcacacatcaaagatcaaaaactcaca
aaatctgaattatttaaagccttctcaattcgttttgttcgtcttcacggaatccttttt
acaaggacaagcttggagacttttggtgaagtatttggctcagtaattaatgatctgatt
gtgctcctttcctctggtccccaagaggaacttaattttggattgactggtgctgaaaac
tcattaaccatgctgaggcttatttccattatgatattcactgttcacaatgtgaaaagg
gagtcagagaaccaatcatatgcagagatccttcaacgtagagtgttattgcagaacgcc
tttacatcagccttcgaatttgctgggtatattctcaagagatgtgttgagctgcaagat
tctgcatcaagctatcttttgcctggtattctgcttttcattgaatggctggcatgtcat
caagacatagcagccagttctgatatggaggaaaaagaagagggtgcaagactgttcttc
tggaatcactgcatttcttttatgaacaaacttattgagacaggacttgcatctattgac
ggtgatgatgatgaagcttgcttttttaacatgagtaggtatgatggagaagaaactggg
aatagacttgcactttgggaggattttgagttgagaggattcttaccgttagtgccagca
caactcattttagatttttcaaggaagcatcctctcatgaatgatggtggcatgaaagac
agtgtatcccgtgttcaaaggattctggcagccggacggtctctttcaaatattgtttat
attgaacagaaaaaattatatatcgatccaaaccggaaaaaatttattctgagcagtgag
cctccagtatttgatggtaatatggaccctacctttcaaggtctgctggattcaggtgtt
aagaagcagggaagtgaaatcaaagatgtggctgatctttgggttgcacaaaggacgtct
agtcttggagtggcagaaatcaaggaccacatctatatgggaggagaagatgatgaagaa
gaaattgtgttcaagcctcctacctctgagaagtatgcagatgctaagttaactgctttt
aatttgatcaaccctgtacaagaatattttctttctgatcaggcaatgccagctcggcat
ctttctccaaattttggtcaaattaatgtgcctgcactaccgaataacgaatggttctca
aagcaggaagcatgcttatcaaatggtattaagaatatgaatataacagaaaatgggcat
ttgaataagcaggtattgcaagaaagctcaagtatggtgcagcctcaaccattctcacat
gtattgtcaacttctgttaatctggatgccgataacacattctccaatcaaattacagct
gcagatgtagtgttgccatctgcatttgacactatattgccatcaggagccatttctgat
ggtttggctatgaagccctctggctttccatctttgaagaaaagtcctgtaagtcgtccg
gttaggtatgctgggccacctcctggatttagccatatcagttctagacagcagaatgga
ggtattccaaattcttgcaccaatgatcagctacatgagattgatgattatagctggtta
gatactagtagatcatctaccaaaagcatgggcgtggataattcttttgataaaataaca
cacagggttccatacattaacacgagcaatactactccatttgcaactgtttccaccttc
ccattccctggaaagcaagtttctaacgtgcaatctgaaattgtcaatggacgaagatgg
catgatttccagctcttcgaacaactgaaacctttcaatgtgcagcaaaatcagcactca
aatccacagcagactctgctgcctgaacaatataaagcacaatcactttggtctaatcag
tactttgtgtga
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