Zingiber officinale (ginger): 121998696
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Entry
121998696 CDS
T08725
Name
(RefSeq) ATP-dependent helicase BRM-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121998696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121998696
03036 Chromosome and associated proteins [BR:
zof03036
]
121998696
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121998696
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121998696
Chromatin remodeling factors
BAF complex
121998696
PBAF complex
121998696
GBAF(ncBAF) complex
121998696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
AAA_14
PGBA_N
Motif
Other DBs
NCBI-GeneID:
121998696
NCBI-ProteinID:
XP_042409650
LinkDB
All DBs
Position
6A:complement(149108103..149122108)
Genome browser
AA seq
2206 aa
AA seq
DB search
MQSGSGRNQAGASHSQPHPSDAASPSSSSSHATSVPGHLGREAIQQQQQLLLLQQQQLAQ
RQAFQQQEHQKQVQRIEQHHVQNPVHQAFLQYALQNSQHRPSGNWFMNQQGKMSTASPGS
QGMFANNLIAQERASIQTANHSQSSILNQTGDHFAHTERQLELGNIVSGQRNDPKPSQIA
SGQLVPTNMVRPSQSRQSITTTQSNANNQFTMAQMQAMQLCAKEHNIDLTVPANLNLLAQ
VLPHWQSSRLAAIQKQSETCTTGQQLCLPSVKQSVISSPIENEGSVYVNSISDYSSQAGP
STCPQPVSSDIMTSGGETITGKSNDLQTQAQAHNRESENERLDKSQLITIDGGQIIHPPN
SSSSMIMEQCYSKNVHTGNNSQQMQQLRSLQQLNRPMTQPEIRSNDAVGGNQFPSQSGSV
QVPNQQFGFTKQQLFVLKAQILAFRRLKRGERNLPPEVLRAIAGLPADSLPQQSHVQSGS
GLQERTNAMEGMHMQLDEGLQPTFSSKDQNLPKEEPGTREEKAVMACQMPDVACSATEPL
QSAFSAKIEESRSPIIAEQETGKGNHNVHAKGDNCNEKGKAVSVEDASASTGQEKKPASN
STPVPRAGVMRNYHGPLFDFPSFTRKHDLLGSTTLTSNNMTLTYDVKDLLLEEGKVIFGK
KRTENLRKINGLLGVNLERKRIQPDLVMRLQIEEKKLKLLDRQARLRDELDQQQQEIMAM
SDRPYRKFVKQCERQRIELLRQVQQIQKASRDKQLKSIFQWRKRLLETHWAIRDARTTRN
RGIAKYHEKMLKEFSKRKDDGRNKRMEALKNNDVDRYRQMLLEQQSNVPGDAAQRYEVLS
SFLSQTEEYLHKLGGKIADAKSHQEVQEAANAAAAAARIQGLSEEEVKAAAACAGEEIMI
RHRFSEMNAPKDSSSVNKYYNLAHAVMEKVVRQPSMLRFGTLRDYQLVGLQWMLSLYNNK
LNGILADEMGLGKTVQVMSLIAYLMEFKGNYGPHLIIVPNAVLVNWKSELLNWLPSLSCI
FYVGGKDERARLFSQEVCAVKFNVLVTTYEFVMYDRSKLSKIDWKYIIIDEAQRMKDRES
VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNVLLPEIFDNHKAFHDWFSKPFQKDGP
SHNPEEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVPIVLRCRMSAFQGA
IYDWIRSTGTLRIDPEEEMLKVQKNPMYQVKTYRNLNNRCMELRKVCNHPLLNYPYFSDC
SKEFIVRSCGKLWILDRILIKLERAGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTT
TLEERESAIVDFNSPDSDSFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPQNEEQAVARA
HRIGQTRDVKVIYLEAVVDKVSSYQKEDEMRDGDAEDSEDDLAGKDRYMGSIESLIRNNI
QQYKKDMADEVINAGRFDQRTTHEERRVTLETLLHDEERFQETVHDVPSLQEVNQMIARS
EEELELFDQIDEECDWTGDMVRYNEVPKWLRVSSRELNAVVASISKKPSKNILSSTIELE
PNGLHSASSPSKTERRRGRPRGSAMKKHLTYRESSDEENNNSDAESEERNGYEVEGDMGE
LEDEELYGGGDVLTGDKDQAEDGLVCDNDGDEFSLAIERVRNFHAFDEAGSTGSSSSSHK
LLQPVTPSTPSQKFGSISALDAKPGPSSRKTPDELEEGEIAVSGDSTMDLHQSDSLVHEH
YLEDGQVVQPKAKQIKRKRSIRLRPRFNLEKIEDKFNSPKATFQHASWSPALVNHEKLPQ
SRGEESEAFVEPSTGGLNRISPSVKRRRNLPSRVISSPIVQKSARLSTSAEDGYEHSMES
WNSRTISSNAPNLVTTKMSDSTQRKCKNVISKLQRRIEKDGSQIVPFLSDWWRNEKLNFL
PGSSSNGVINLQTIEQRVDNLEYNGVMDFIADLQLMLKNIVKHCEYSYEVRFEARKLQDL
FFDIMKIAFPDADFSEAKNAVIFSSPGFSPLSPRPASTTEIKRQTLTNKSESASAFSKTF
PTGSTPLHDERRTRSNSSKSHKESRPTGGGARQQVPDCSQLLTHPGDLVICKKRRNDRDK
TGSKQINTPNSPSNQGWLPSSMVNNQGLSVHASSMARNTTKAQAQAQAQSDTQPTQKVIS
PLSRAHHERKQTDGGNGSSTAVADVQWANPVRRTRTDTGKRRPSHM
NT seq
6621 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccgggagcgggcggaaccaggcgggtgcgtcgcattcccagccgcatccgtcc
gacgctgcatctccctcttcctcgtcgtcacatgcgacctcagtccccggccatctgggc
agggaagcaatccagcagcaacagcagctgctgctgttgcagcaacagcagctcgcacag
aggcaggcattccagcaacaagagcatcagaaacaagtgcagcgtatagagcagcaccat
gtccagaacccagttcatcaagcatttctccaatatgctttgcaaaattcccagcacagg
ccttctgggaattggtttatgaatcaacagggaaaaatgagtacagccagtcctgggagt
cagggcatgtttgcaaataatttgatagctcaagagcgtgcatctattcagacagctaac
cattcacaatcatctatacttaatcagacaggtgatcattttgcacatactgagaggcag
ttggagctagggaatattgtttctggtcagagaaatgatccaaaaccttctcaaatagca
tctggacagttggtgccaacaaacatggtaagaccatctcaatcacggcagtcaataaca
accacacaaagtaatgcaaacaatcaattcacaatggcccagatgcaagctatgcagttg
tgcgctaaggagcataatattgatttaacagttcctgccaatttaaatctgctcgcacaa
gttctgccccattggcagtccagcagactagctgcaatccagaaacaaagtgagacttgc
acaactgggcagcaactgtgtttgccatcggtgaagcaatcagttatttcttcacccatt
gaaaatgaaggttctgtatatgttaacagtataagtgattactccagccaagctggtccc
tctacttgcccacagccggtttcatctgatataatgactagtggaggggaaaccatcaca
gggaagtccaatgacttgcagacacaagctcaggctcataacagggagagtgagaatgag
agactagacaaatctcaactaataacaattgatggtggtcaaatcattcatccaccaaat
tcatccagtagcatgattatggaacagtgttattctaagaatgttcatactgggaacaac
tcacagcaaatgcagcaacttagatctttgcagcagctaaaccgacccatgacacaacct
gaaattcgttccaatgatgctgttggtgggaatcaatttccatctcagagtggatctgtt
caggtgccaaaccaacagtttggatttacaaaacaacaactttttgtccttaaagctcaa
atcttagcttttaggcggttgaagcgtggcgaacggaatcttccccctgaagttcttcga
gcaattgctggactacccgctgattctttgccacaacagtctcatgttcaatcaggatca
ggtctccaggaaagaactaatgccatggagggaatgcatatgcagttggatgagggtctt
cagccaactttttcaagtaaagaccaaaatctaccaaaagaagagcctggtactagggag
gaaaaagctgttatggcttgccaaatgccagatgtagcatgttcagctacggaacctttg
caatctgcattttctgctaagattgaggaaagcagatctcctatcattgctgaacaggag
actggaaagggaaatcataacgtacatgctaaaggtgacaactgcaatgagaagggtaag
gcagtatccgtcgaagatgcatcagccagcactggacaagagaagaaacctgcctctaat
tctacaccagttccaagggctggtgttatgagaaactatcatggtccgctttttgacttt
ccatcatttacaaggaaacatgatcttttgggttcaacaactctgacctccaacaatatg
acattaacttatgatgtgaaagatttgctactagaggaaggtaaggtcatctttggcaag
aaaagaacagaaaatttaaggaaaattaatgggttacttggtgtgaatttggaaaggaaa
aggatacagcctgaccttgttatgaggctgcaaattgaagaaaaaaagcttaaactttta
gatcgtcaagctcgtttacgggatgaacttgatcagcaacagcaagagataatggctatg
tcagacaggccctatcgaaaatttgtcaagcagtgtgaaagacagcgcattgaactctta
aggcaagttcaacagatccaaaaagcctcaagagacaagcaactaaaatctatcttccag
tggcgtaaaaggcttctggagactcattgggccatccgtgatgcaaggactacaagaaat
agaggaattgctaaataccatgaaaagatgttgaaggagttctcaaagaggaaagatgat
ggcagaaataaaagaatggaggcactgaagaataacgatgttgatcgatatcgtcaaatg
ctactggagcagcaaagtaatgttcctggtgatgcagctcaacgttacgaagtgctttcg
tcctttttatcccagaccgaagagtaccttcacaaacttggaggtaaaattgcagatgcc
aaaagtcatcaagaggtccaagaggcagcaaatgcagcagcagctgctgcacgtatccag
ggactttcagaagaagaggtcaaggctgcagcagcatgtgcaggtgaagagataatgatc
aggcatagattctctgaaatgaatgctccaaaagacagttcttcagtcaacaagtactat
aatttggctcatgctgtgatggaaaaagttgttagacaaccctcaatgttacgttttgga
actttgagagactatcaacttgttgggctacagtggatgctatccctctataataataag
ctgaacggaatactggcagatgagatgggtctaggaaaaactgtacaggttatgtcattg
atagcttacctaatggagtttaaaggaaattatggtccacacctaattatagttcctaat
gctgttttggttaactggaagagtgagctactgaactggttaccttcgttatcttgtata
ttttatgttggtggaaaggatgagcgggcaaggcttttctcacaggaagtatgcgctgtt
aagtttaatgtacttgtgacaacttatgagtttgttatgtatgatcgctctaagttatca
aagattgattggaaatacataattattgatgaagcccagaggatgaaggacagggaatct
gttttggcacgggatctggatagatatcgctgccaaagaaggttgttgcttactggcacc
ccattgcagaatgatctgaaagagctatggtccctcttaaatgttcttcttcctgaaata
tttgataatcacaaggcatttcacgattggttttcaaagccttttcagaaggatggtcct
tcacataatccagaggaagatgactggcttgagactgaaaagaaggtaatcatcatccac
cgtctgcatcaaattcttgaacctttcatgctaagaaggcgcgttgaggatgttgaaggt
tcacttcctcccaaggtgccaattgttctaagatgtagaatgtcagcttttcaaggtgct
atatatgattggataagatctactggtactcttaggattgatcctgaagaggaaatgctg
aaggttcaaaagaatccaatgtaccaggtcaaaacatatagaaatcttaataataggtgc
atggagctgaggaaagtttgcaatcatcctttacttaactatccttatttcagtgactgc
tctaaagagtttattgttagatcatgtgggaaactttggattcttgatagaattctcata
aaacttgagagagcaggccatcgtgttcttcttttcagtacaatgacaaaattacttgat
attttagaagagtatttgcaatggagacgacttgtataccgacgaatagatggtacaact
acactagaagaacgggaatcagcaatagtggatttcaacagccctgactcagattctttt
atcttcttgcttagtatccgtgctgctggaagaggccttaatctccagactgcagatact
gttgtgatatatgatcctgatcccaatccgcaaaatgaagagcaggcggttgctcgagct
catcgtattggtcagacaagagatgtgaaagtcatatacttggaagctgttgttgataaa
gtatcaagctaccaaaaagaggatgaaatgagagatggtgatgcagaggattcagaggat
gatcttgctggtaaagataggtatatgggatcaattgaaagccttatacgtaataatatt
caacagtacaagaaagatatggctgatgaggtcataaatgctggccgatttgatcaaaga
acaacacatgaagaaagacgagtgactttggagacacttctgcatgatgaggagagattc
caagaaaccgtgcatgatgttccttctcttcaggaggtaaatcaaatgattgctcgtagt
gaagaagaacttgaattgttcgatcaaattgatgaggagtgtgattggacaggtgatatg
gttagatacaacgaagtaccaaaatggcttcgtgttagttctagagaactaaatgctgtt
gttgctagtatatctaagaaaccatcgaagaacattttatccagcacaattgagctggaa
ccaaatggcttgcattctgcttcatcccccagtaagacagagagaagacgaggtcgcccg
aggggttcagctatgaaaaagcatcttacatacagggaatcatcagatgaagaaaataac
aactctgatgctgaatcggaggagagaaatggatatgaagtagagggagacatgggtgaa
cttgaagatgaagagttatatggtggtggtgacgtgctgactggtgacaaggatcaagca
gaggatggcctggtctgtgataatgacggtgatgaattctcactagcaattgaaagggtc
agaaactttcatgcttttgatgaagctggttcaacaggatcttcttccagtagtcataaa
ttactgcaacctgtgacaccttcaacaccttcacaaaaatttggatcaatttctgcttta
gatgccaagccaggcccttcttcaagaaagacaccagatgagctagaggaaggggaaatt
gcagtgtcaggggattccaccatggatcttcatcagtcagatagtttggttcatgagcat
tacctagaggatggacaggtcgttcaaccgaaagcaaagcaaataaaacgtaaacgcagc
atccgtcttcgtccaagatttaatttggagaaaattgaagataaattcaacagtcctaaa
gccactttccagcatgcttcttggtcacctgcgcttgttaatcatgaaaaacttccacag
tctagaggtgaagaatctgaggcatttgtagaacctagtaccggagggctgaataggatc
agtccatcagtgaagcggaggcgcaacttaccatcaagagtgatttcgtctcccattgtg
caaaagtctgctaggttgtctacatctgcagaggatggttatgagcactccatggaaagc
tggaatagcaggaccatcagctccaatgccccaaaccttgtgaccacaaaaatgtcagac
agcacacagagaaagtgcaagaatgttattagcaaactccaaagaaggatagaaaaagat
ggaagtcaaatagtacctttcttgtcagactggtggagaaatgaaaaattaaactttctt
cctggttcctcaagcaatggtgtcataaacttgcaaaccatcgaacagcgtgtggacaac
ttagaatataatggcgtgatggatttcatagcagatttgcaattgatgctgaaaaatata
gtgaaacattgtgaatattcttatgaggtgaggttcgaggcacgaaaacttcaagaccta
tttttcgacatcatgaagatagcatttccggatgcggatttcagtgaagcaaagaatgca
gtgatcttctccagccctggattttcacctctttccccaaggcctgcttctaccactgag
attaagcgacagacactaaccaacaaatcagaatcagcatctgccttcagcaagaccttc
cccaccggatcaactcctcttcacgacgaaaggaggaccaggtcaaactcttccaaatcc
cacaaagaatcaaggccaactggtggaggcgcgaggcagcaggtgccagactgttcacag
cttttgacacatccaggagacttggttatctgcaagaaaaggaggaatgacagggacaag
accggttcaaagcagataaatactcccaattcaccgtctaatcaaggttggttgccttcg
tcgatggttaataatcagggattatcagttcatgcatccagtatggcaaggaacaccacc
aaagctcaagctcaagctcaagctcagagtgatacacaaccaactcaaaaggtgatatct
ccactgagccgagcacatcatgaaaggaaacaaacagatggaggaaatggatcatccact
gctgtggctgatgtacaatgggcaaatcctgtgaggcgaacaaggacagatactggcaaa
aggcggccgagtcatatgtga
DBGET
integrated database retrieval system
