Zingiber officinale (ginger): 121998727
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Entry
121998727 CDS
T08725
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121998727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121998727
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121998727
Spliceosome [BR:
zof03041
]
Complex C
Other components
Step II factors
121998727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ATPase
ABC_tran
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
121998727
NCBI-ProteinID:
XP_042409696
LinkDB
All DBs
Position
6A:complement(149839740..149847120)
Genome browser
AA seq
711 aa
AA seq
DB search
MPSFPQVSSPQDKQHLLANEDHRHQHLLARRQSILLHRKSLPIASVERRLVEEVRKNDTL
IIVGETGSGKTTQLPQFLYNGGFCCDGKTIGISQPRRVAAVTVAKRVAEECSVKLGQMVG
YSIRFEDVTSSSTRIKYMTDGLLLREAQLDPFLSRYSVIIIDEAHERTVHTDVLLGLMKK
VQLARSHATNKENNLSKEAADGLAKSGNFSLMPCQNAKLTSLKLIIMSASLDARCFSEYF
CGAKAVHIHGRQYPVEILYTYQPEPDYLDATLITIFQIHLEETAGDILAFLTGQDEIESV
ERLINERIKQLPDSSQNLLVVPIYASLPSEQQMNAFKPAPSGFRKVILATNIAETSVTIP
GIKYVIDAGLVKARSYNPVTGMESLIIIPTSKAQALQRSGRAGREGPGKCFRLYPESEFG
KLADATVPEIKRCNLSNVVLQLKALGIDDIIGFDFMEKPSRMTIVKSLEQLFLLGALTDD
YKLSSPVGHQMAKLPLDPMYSKALILAAEFKCLEEMLIVVAMLSVESIFYFPREKLEEAR
AARKSFSSPEGDHITMLNVYRTSADSLEKNKIANVKEKTLEKKLNKWCRENFINYRSLRH
ARDIHSQIEGHIQQMGFPASSCGNDTLQFRRCLTASFFLNAAMKQPDGSYRALASGQTVQ
VHPSSMLFRTKADCIIYNELVRTNQNYIRNVTRVDPLWLPELAPQYFAANG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgccatcttttccccaagtttcttcacctcaggataagcagcacctgctcgccaacgag
gatcataggcaccagcatcttctagccaggaggcagtcaattctactgcataggaagtca
ttgcctatagcctcagttgagcgccggcttgtggaagaagttagaaaaaatgatactttg
ataatcgttggggaaacaggaagcgggaagactactcagctaccacaatttttgtacaat
ggtggattttgttgcgatgggaaaaccattggcattagtcaacctcgacgagttgctgct
gttacagttgcaaaacgagtagctgaagaatgtagtgtcaagctaggtcaaatggttggt
tattctattagatttgaggatgtcacatccagctccacaaggattaagtacatgaccgat
ggtttgcttcttagggaagcacagctggatccctttctgtctagatatagtgtcatcatc
attgatgaagctcatgaaagaacagtgcacacagacgtgctgcttgggttgatgaagaaa
gtgcaacttgcacggtctcatgctactaataaggagaacaacttgagcaaggaagctgct
gatggcctagcaaagtccggcaacttctcccttatgccatgtcaaaatgcaaaacttact
tccttgaagttgataattatgtctgccagtttggatgcacggtgcttctctgagtacttc
tgtggtgcgaaagctgttcacattcatgggcgccaataccctgtagaaatactttatact
tatcaacctgagccagattacctcgatgctaccctaattaccatttttcagatacatttg
gaggagactgctggagatattcttgcatttttaactgggcaagatgaaattgaatcggtt
gaaaggctcatcaatgaacgcatcaagcaactgcctgatagcagtcaaaatcttctggtt
gtccctatttatgcatcactcccctcagagcaacaaatgaatgcctttaagcctgctcct
tctggttttcgaaaggttattctagcgacaaatattgcagaaacttctgtaactattcct
ggtattaagtatgttatagatgctgggttggtcaaagctcgttcttacaatccagtgact
ggtatggagtcattgattatcattcctacctcaaaagcacaggctctacaaagaagtggt
cgtgccggacgagaagggcctggaaagtgctttcgattgtaccctgagagtgagtttggt
aaacttgcagatgctactgttcctgagatcaaaagatgcaacctctccaatgttgttttg
cagctaaaagcccttggtattgatgatatcattgggtttgatttcatggaaaaaccttct
aggatgactatagtgaaatctttggaacagctgttcctacttggggctttgactgacgac
tacaagctctcaagtccagtcggacatcagatggcaaagctgcccttggatcctatgtat
tcaaaggcacttatcttggctgccgagtttaaatgcctggaagaaatgttaatagttgtc
gctatgctgtcagtggagtccatattttactttccacgagaaaaattggaagaggcaaga
gctgccagaaagagtttttcaagccctgaaggagaccacataactatgttgaatgtgtac
cgcacatctgcggacagcttggagaagaacaaaattgcaaatgtcaaagagaaaacattg
gagaaaaagttaaataaatggtgcagggagaatttcatcaattatcgttctcttcgacac
gcacgggacattcacagtcaaattgaaggtcatatccagcagatgggttttcctgcatca
tcatgcggcaacgatacacttcagttccgcagatgccttactgcttcgttcttccttaat
gccgcgatgaagcaaccagacggatcatatagagctttagctagtggtcagaccgtgcag
gtgcatccttcttcaatgttgttccgcacaaaggcggattgtatcatctacaacgaacta
gtccgaacgaatcaaaattacattcgtaatgtgactcgagtggacccattgtggttgccg
gagctagctccacagtactttgccgccaacggctag
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