Zingiber officinale (ginger): 121998803
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Entry
121998803 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121998803
09122 Translation
03013 Nucleocytoplasmic transport
121998803
03015 mRNA surveillance pathway
121998803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121998803
03041 Spliceosome [BR:
zof03041
]
121998803
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121998803
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121998803
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
121998803
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121998803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
121998803
NCBI-ProteinID:
XP_042409798
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All DBs
Position
6A:complement(150798819..150804909)
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AA seq
428 aa
AA seq
DB search
MGEAKDNDVYEEELLDYEEEEEKAPDSVAAKVSGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTAGQVAALV
MCHTRELAFQICHEFERFSTYLPDIKIAVFYGGVHIMKHKDILKNDCPHIVVGTPGRVFA
LARDKDLNLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTKYKNFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagccaaggataacgatgtttacgaggaggagctcctggactacgaagaggag
gaagagaaagctccggattcggtcgctgccaaggtttccggtgaagcagtgaaaaagggt
tacgttgggattcacagttccggattcagagactttctgttgaagccagaactccttcgt
gctatcgttgattgtggttttgagcatccttccgaagtacaacatgaatgtattccacaa
gctattctgggaatggatgttatttgtcaagcaaagtctggaatgggtaaaacggcggtt
tttgtactttctactcttcagcaaattgagccaacagcaggccaagttgctgcacttgtg
atgtgtcatacaagagaattggccttccagatttgccatgagtttgagcgattcagcacg
tacttaccagacatcaagattgctgtattctatgggggagttcacatcatgaagcacaag
gacattttaaagaatgattgcccacatatagtagttggcacaccaggaagagtgtttgca
ttggcaagagataaagatcttaatttgaagaatgtgaggcattttattcttgatgaatgc
gataagatgctggagtcacttgacatgcggagagatgtacaggaaattttcaaactgaca
ccgcacgacaaacaagtcatgatgttttcagctactctcagcaaggagatacgccctgtc
tgcaagaaattcatgcaagatcctatggaaatatatgttgacgatgaggccaagctaaca
cttcatggtctagtacagcattacatcaaattgactgagttggaaaagaatcggaagctg
aatgatcttttggatgcactggacttcaatcaagtagtgatttttgtgaaaagtgtgagc
cgtgcagctgagctgaacaagttacttgtagaatgcaattttccatcgatctgtatacac
tctggcatgtcacaggaagaaaggttgacaaagtacaagaactttaaggaagggctcaaa
agaattcttgttgctacagatctggttgggagaggaattgatattgaacgggttaacatc
gtgattaattatgatatgccagattctgctgacacatacttgcacagggttggaagagct
ggtcgatttggaactaaaggacttgctattacatttgtttcatcggcagctgattctgat
gtccttaatcaggtgcaagagaggtttgaagtagacataaaagagctgcctgagcagata
gacacttcaacgtacatgccttcgtga
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