Zingiber officinale (ginger): 121998806
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Entry
121998806 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121998806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121998806
03036 Chromosome and associated proteins [BR:
zof03036
]
121998806
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121998806
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121998806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
121998806
NCBI-ProteinID:
XP_042409803
LinkDB
All DBs
Position
6A:150981307..151005346
Genome browser
AA seq
1089 aa
AA seq
DB search
MRNILTDPAAYQHTPPPRYPPRQGYPSPPHPAPPPQNHPVAPQQERALIPNRDSNLVRSS
QNEAVGGDCRSLMFSKYKKRRMLYNGDVGSLLPTLYSSDYFTKPSIDELAALETIDSGYC
SRVPDFTIGRVGYGQIKFIGSTDVRWLHLDQIVKFDRNSVVVYTDEADKPPVGQGLNKAA
EVTLTLKLRSLDAHSPELDRFGDILRKRADRQGAVFVSFDLSSGNWTFLVHHFSRFGLDD
EEEEDIVMIDNDSDSTAEVNEFPAHSAGAVLSHSLPAHLGLDPVRMQELRALMFSSEEYE
DLNGSFQKINSYNKEQLKEDSPVINGKILANTTILHGSSRKGRIQISSSPIRRPSQALLE
YNLNNTDLSPSRDIFLSGHRKGLSLTRLTKVEGFRLEEKHQTPLSGGYSKNIVDAALFMG
RSFRVGWGPNGILVHSGTPVDSPSCGLSSQVNIQKVAMDKTVRDKNNKINEELVDLHFSS
LMNLHKSVEHETSQLVHDSFKLKLLRVECSRLTLPEICQAYIETIEKAHEISELSTSNRV
FLMHQVSIWALVRVLFSERETNEQSNDDDREGMMLDTKDDSLDMDVEAKPFARRAEFSFW
LQESVCHRIQDDITYLNDSSDLEQILVLLTGRQLDAAVELAAARGDVRLAILLSQAGGSM
VSRSDMAQQLDIWRMNGMDFKFIENDRLKLYELLAGNIQDAFQVSSIDWKRFLGLIMWYQ
LPPDTPLSVVFHTYQQLLCEKRAPHPVPVYIDEGPLEEEEVDWNIGDNHDLAYYVMLLHA
NEDKNFNQLKTMFSAFSSTYDPLDYHMIWHQRAILEAIGAFSSKDLSILDMSFVDQLLCL
GLCHWAIYVVLHMPYCDDAPYIQAKLIKQILCQNCEIWSSQENQYQFIEELGIPSEWMHE
ALAIYFEYQGDLPEALEHFLRCSNWKKAHSIFITSVAHHLFLSSQDEEIWRITSFMEEHK
SEISDWDLGAGIFFDFYILRSSLKEGDIMSETDPLGKKNDECRSFFTRLSESLLIWGIRL
PADARLTYAKMSEELCNLLMSVPGLSSTAMVQMSCFDTMLIAPTPEDMRSSHLQSAVSVF
TYFLSEIST
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatatattgaccgaccctgctgcttatcaacacacaccacctccacgctatcct
cccagacaaggttatccaagtcctccccatccggccccgcctcctcagaatcatccagta
gcacctcagcaagaaagggcgctaataccgaatcgtgactccaatcttgtcagaagtagt
caaaatgaagcagttggtggtgattgccgcagtttgatgttttctaagtataagaaaaga
agaatgttatacaatggggatgtaggctccttgctacctactttgtactcctcagactat
tttaccaagccctcaattgacgagttggcagcactagagacgattgactcaggttattgt
agccgagttcctgatttcactattggaagagtgggttatggtcaaattaaattcatagga
agcactgatgtcagatggttacatttggaccagattgtaaaatttgacaggaattcagtg
gtggtatatactgatgaggctgacaaacccccagtgggtcaaggccttaacaaagctgct
gaagtaactttgaccctgaaactgagatcattagatgctcattctccggaattagataga
ttcggtgatatactaaggaaacgtgctgatagacaaggagccgtctttgtctcatttgat
ttgtcaagtggcaattggacattcctagtgcatcatttcagtagatttggattggatgat
gaagaagaagaggatattgtcatgattgacaacgatagtgattcaaccgcagaggtaaac
gaatttcctgcacattctgctggggctgtgttatctcattcacttccagctcatctgggt
cttgatcctgtaagaatgcaagaattgagggcattgatgttttcttctgaggagtatgaa
gatcttaatggatcattccaaaagattaatagttacaacaaggaacagttaaaggaggat
tccccagtaatcaatggcaaaatattggctaatacaacaatattacatggttcttccagg
aagggaaggattcaaattagttcttcacccattcgaagaccctctcaagccctactggag
tacaatctaaataacactgacttgagcccatcaagggacatttttctgagtggtcatagg
aaggggttgtcactaactaggctgacaaaggtagaggggtttagactggaggagaagcac
caaactcctttatctggaggatactctaagaatatagtagatgctgctttgttcatgggt
agatcttttcgagttggatggggaccgaatggcatacttgttcatagtggtactccagta
gacagtccaagctgtggattatcttctcaagtaaatatacaaaaggttgctatggacaaa
actgtgagagataagaacaataaaatcaatgaggagcttgttgatttgcatttttcttct
ttgatgaatctccacaagtcggtagaacatgaaacttcccaattggtgcatgattctttc
aaattaaagcttctgcgagttgaatgcagtcgtttgactcttcctgaaatttgccaggct
tatattgagactattgagaaggcacatgagatttctgagttatctacatctaaccgtgtg
ttcttgatgcaccaagtatctatttgggcattggtaagagttctattttcagagagggaa
acaaatgaacagtcaaatgatgatgatagggaaggaatgatgcttgatacgaaggatgat
tctcttgacatggacgttgaggcaaaacctttcgctcggagagcagaattttctttttgg
ctgcaagagagtgtttgccatcgaattcaggatgatataacctacttaaatgattctagt
gatttggagcagatacttgtacttttaactggacggcagctggatgcagcagttgagctt
gctgctgcaagaggagatgtccgactagctattttactaagtcaggctggtgggtcaatg
gtcagtcgttctgacatggcacaacagttggatatctggagaatgaatggcatggatttt
aagtttattgagaatgataggttaaagttgtatgagttgcttgcaggtaatatacaagat
gcattccaggtttcatccattgactggaaaaggtttctagggttgataatgtggtatcaa
cttcctcctgataccccattgtctgtggtatttcatacttatcagcagcttctctgtgaa
aaaagagctcctcatcctgtcccagtttacattgatgaaggacctcttgaagaagaagaa
gtggactggaacattggtgataatcatgaccttgcatattatgttatgcttcttcatgct
aatgaagacaagaacttcaaccaactgaaaaccatgtttagtgcattctcttccacatat
gatccacttgactaccacatgatctggcaccagcgtgccatattggaagctattggtgca
tttagttcaaaagatcttagtatacttgacatgagttttgttgaccagttgctatgtctt
gggttgtgccattgggcaatttatgttgttctgcacatgccttactgcgatgatgcacca
tatatccaggctaagcttattaaacagattctgtgtcaaaattgtgaaatttggagctct
caagagaatcaatatcagtttattgaagaacttggtataccatcagaatggatgcatgag
gctctggcaatatacttcgagtatcagggagatttgccagaggccctggaacattttctt
agatgctctaattggaaaaaagctcactcaatcttcattacatcagtggctcatcactta
ttcctatcatctcaagatgaagagatttggagaatcacaagtttcatggaagaacataag
tctgaaatttctgactgggacctgggtgctggaattttttttgacttctacattctaagg
agttcattgaaagagggggacatcatgagtgaaacggaccctcttggaaagaaaaatgat
gaatgcagaagcttttttactcgtttaagtgaatctctattgatttggggaatcagattg
cctgctgatgcaaggttaacctacgcaaagatgtcagaagaactgtgtaatctactgatg
tccgttcctggtttgagctccacagcgatggttcagatgagctgctttgacacgatgctc
attgctcctactccggaagatatgcgatccagtcatctgcagagcgcggtttcagtcttc
acttattttctatcagagatctcaacatga
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