Zingiber officinale (ginger): 122000595
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Entry
122000595 CDS
T08725
Name
(RefSeq) cleavage stimulating factor 64-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122000595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122000595
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122000595
U7-dependent histone pre-mRNA processing factors
122000595
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
122000595
NCBI-ProteinID:
XP_042410890
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Position
7A:11238..16716
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AA seq
506 aa
AA seq
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MAASVGSQHRCVFVGNIPYDATEEQLIQICEEVGPVASFRLVFDRETGKPKGYGFCEYKD
EETALSARRNLQGYEINGRQLRVDFAENDKNADRSREQGRGGPGLASSADVQKQPAGAPN
LSDSLHQPIGFPSAATAGNVMSSALSGAQTSNAQNVLLSQSGMGNDPLTHYLSRLSRQQL
LEIMSEMKTLTTRCKPLVRQFLQSSPQLTKALFQAQIMLGMVTPQTIAGIGQTSSQALSG
QLSKGSENQLPVTSHTPGNLQQALLPLQQIHVQPQYQLPPLPQNQVLVANAADKTGVIAV
PSRWPQSIGSVPVQPQQILQRHPPLPQLPVPTAVASLAHNTPLALPNMHLQQSNLSHLTS
QPGSSSGPVQVSTSSGVQASTWPSALKKRGLDVGLADQTRMSGNLSEQNTYPVKFQKLED
QTGATQKVSNPAVNSASLQKLGTSAATRSQVTPDIVHSQKPTLQLSSDVESALLQQVLSL
TPEQLSSLSLEQQQQVIHLQKMLSHK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctccgttggctctcagcaccgatgcgtcttcgttgggaatattccgtatgat
gccacggaggaacagcttatccagatatgtgaggaagtcggccctgtggcgtctttcagg
ttagtctttgatagagaaactgggaagcctaaaggatatggcttttgtgaatataaggat
gaagagacagctctcagtgctcggcgaaatctccaaggctatgagataaatggtcgtcag
ttaagagttgattttgctgaaaatgataaaaatgctgaccgaagtagagaacagggtcgt
ggtggaccagggttggcatcaagcgcagatgttcaaaaacaacctgctggagcccctaat
ttgagtgattcattgcatcaaccaattggcttcccttcagctgcaactgctggcaatgtc
atgtcatcagctttaagtggtgctcagacttccaacgcacaaaatgtgttacttagtcaa
tctggaatgggaaatgatcccttgactcactatctgtctagactttctagacaacaattg
ctagagattatgtcggaaatgaagaccttgactactcgatgcaagccactagtgcgacaa
tttctacaatcaagccctcaattaacaaaagctctctttcaggcacagataatgctaggc
atggttacacctcagacgattgctggtattggacagacttcttcacaggcactaagtgga
cagttgtccaagggatctgaaaatcagcttcccgttacatcacacactcctggaaacctc
caacaggctttattacctcttcaacaaatacatgttcaacctcaatatcagctaccacca
ttgcctcaaaaccaagtattagtggccaatgcagcagataaaactggagtcattgcagta
ccatcaagatggcctcaatctattggcagtgttccagtccaacctcagcaaatattgcag
aggcacccccctcttccccaattgccagtgcccactgctgttgcaagtctagctcataac
actcctctagcccttccaaatatgcatctgcaacagtcaaacttatcacatcttacttct
cagcctggctcctcgagtggtccagtgcaagtttcaacatcatctggtgtacaggcttct
acctggccttctgcattgaaaaaacgaggtttagatgtggggttagcagatcaaacccga
atgtcaggcaatttgtcagaacaaaatacttatcccgtaaagttccaaaagttagaggat
caaactggtgccacccaaaaagttagtaatcctgcagttaattctgcttcacttcaaaaa
cttggcactagcgctgcaactaggagccaggtcacaccagatatagtccattcacagaaa
ccaacgcttcagctttcgtccgatgtagaatctgctttattgcagcaagtacttagtcta
acaccagaacagctgagttcgttatctctagagcagcaacaacaagttattcatctccaa
aagatgttatctcacaaatag
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