Zingiber officinale (ginger): 122000735
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Entry
122000735 CDS
T08725
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122000735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122000735
03110 Chaperones and folding catalysts [BR:
zof03110
]
122000735
03029 Mitochondrial biogenesis [BR:
zof03029
]
122000735
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122000735
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
122000735
Messenger RNA biogenesis [BR:
zof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
122000735
Chaperones and folding catalysts [BR:
zof03110
]
Heat shock proteins
HSP60 / Chaperonin
122000735
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
122000735
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122000735
Exosomal proteins of other body fluids (saliva and urine)
122000735
Exosomal proteins of breast cancer cells
122000735
Exosomal proteins of colorectal cancer cells
122000735
Exosomal proteins of bladder cancer cells
122000735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
122000735
NCBI-ProteinID:
XP_042411107
LinkDB
All DBs
Position
7A:complement(2285053..2289360)
Genome browser
AA seq
583 aa
AA seq
DB search
MHLSSCSALFSAKNISFPSVWDWRRVQIAPKRSFFQRNFAVTAGHKRITFDNDCRRALLA
GIDKLADAVTVTLGPKGRNVVLDEKEVPKVINDGVTIAQAISLPDGIENAGAMLIQEVAK
KTNDSAGDGTTTAIVLAREIIKLGLLAVTSGANPVSLKKGIDKTVHELTQVLRSKSIPVN
GKEDIQAVAAISAGNDNFVGNLLAAAIEKIGRDGVISIESSSSFDTTIEVEEGMKIDKGY
ISPHFITNQDKQIVEFENARVLVTDQKVVNIGDIVPLLEKATQLSVPLLIIAEDISNQVH
ATLVLNKQQGVLNVAVINCPGILEGKKALLQDIALMTGADFIASELGLMLRDVTSDQLGI
AQKVTITSKSTTIVADPSMKAEIQARISQIKKDLADVDSSYLSKKLSERIAKLSSGVAVI
KVGAPTEAELEDRKLRIEDAKNATFAAMAEGIAPGGGAVYVQLSKHIPPIIDMLEDSDEK
IGAEIIGKALLVPAASIARNAGYDGSVIVEKLLESEWGVGYNAMTNEFEDLFESGVVDPC
RVARCALQNAASIAGIVLMTQAVMVDKTKKPKPAVPYVPGITP
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcacctctcatcctgttccgctctcttctcggctaaaaacatatcttttcctagcgtt
tgggattggagaagggtacaaatcgcgccaaaaagatcatttttccagaggaattttgcc
gtaacggctggccataagaggataacttttgacaatgattgcagaagggcattgctagct
gggatcgataaactcgctgatgctgttaccgttacgttgggacctaaagggagaaatgtg
gttcttgatgagaaagaagttccaaaagtaatcaatgatggcgtgacaattgctcaggcc
atttcactgcctgatggaatagaaaatgctggagcaatgttaatccaagaggtagcaaaa
aagacaaatgattctgctggtgatggtaccacaacagcaattgtgttggctcgagaaatc
atcaagttgggtctattggcagttacttctggggctaatcctgtttctttaaagaaaggt
atagataaaacagttcatgaactaactcaagtattgaggagtaaatccatccctgtaaat
ggaaaagaggatattcaagctgtcgctgcaatctctgctggaaatgataactttgttggg
aatcttttggcggctgctatagaaaaaattggtcgcgatggagtaatatcaattgaatca
tcgtcatcttttgatacaacaatagaggtggaggaaggaatgaagatagacaagggttat
atatcacctcatttcataactaaccaggataaacaaattgttgagtttgagaatgctaga
gttctagttactgatcaaaaggtggtaaatattggtgacattgttcctctgttagaaaaa
gcaactcagcttagtgttccgttgctcattattgctgaagacatctcaaatcaagtgcat
gcaacactggtcctcaacaaacaacaaggtgttttaaatgttgcagtcatcaattgtcct
ggaattttggaaggcaagaaggctcttctgcaggatattgctctcatgacaggtgcagat
tttattgctagtgagctaggtttaatgcttagagatgtaacatcggaccagctaggtatt
gcacagaaagtgactataacgagtaagtcaacaaccattgttgctgatccatctatgaaa
gctgagatacaggcaagaatttcacagataaagaaagatttggctgatgtagatagttcg
tacctatcaaagaagttgtctgagaggatagcaaagctttctagcggtgtagctgtaatc
aaggtaggtgctccgactgaagctgaacttgaggacaggaaacttagaattgaggatgca
aaaaatgcaacttttgctgccatggctgagggtatagcaccaggcggtggggctgtatac
gtccagttatccaagcatattccacccataattgatatgcttgaagactcggatgagaag
attggtgctgagataattggaaaggcgcttcttgtacctgccgcttcaatagccagaaat
gctgggtatgatggttcagtcattgtggaaaaacttcttgaaagtgaatggggagttggt
tacaatgcaatgaccaatgagtttgaagatctttttgaatccggtgtggtggatccctgc
agagtcgcaagatgtgccctccagaatgcagcatcaatagctggaattgtcctaatgacc
caagctgttatggttgataaaacgaaaaagcccaagcctgctgttccctatgttcccgga
attactccttaa
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