Zingiber officinale (ginger): 122000750
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Entry
122000750 CDS
T08725
Name
(RefSeq) FACT complex subunit SSRP1-like isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122000750
03036 Chromosome and associated proteins [BR:
zof03036
]
122000750
Transcription factors [BR:
zof03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
122000750
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
122000750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
Rttp106-like_middle
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
CDC45
DUF6209
Motif
Other DBs
NCBI-GeneID:
122000750
NCBI-ProteinID:
XP_042411132
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Position
7A:2468848..2476434
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AA seq
638 aa
AA seq
DB search
MTDGQLYPNILLGGRGGTNPGQLKVHPGGIAWRKQGGGKIIEIEKADIARVTWMKVPRAY
QLGVRLKDGLFYKFIGFREQDVSNLTNYIQKNIGVAAEEKQLSTSGHNWGEIDINGNMLT
FLVGSKQAFEVSLADVAQTQLQGKTDVYMEFHVDDTTGATEKDSLMDISFHIPTSNTQFS
GDENRPPAQVFLDKIVSLTDVGSSEEAVVTFEGIAILTPRGRYSVELHFSFLRLQGLAND
FKIQYSSVVRLFLLPKSNQHTFVIITLDPPIRKGQTLYPHIVIQFEADNVVDRDLALSEE
LLTTRYKDKLESSYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDGLL
YPLEKGFFFLPKPPTLILHDEIDFVEFERHGTGGSSVASHYFDLLVKLKNDQEHLFRNIQ
RNEYNHLIEFIKAKGMKILNLTDAQTTNGVATALQDDDDAVDPHLERIKNAAGDESDEED
EDFVAEKDDSGSPTDDSGNEESDASESGGEKKSSTKESKKEAAGVKVPSAKGKTRDADEE
SSKKRKPKKKKDPNAPKRAMSGFMFFSNAERDNLKKGNPGMSFTDVGRALGERWKKMIAE
EKEPYESMAKADTKRYREAMADYKSSAPMDVDPGDDSD
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggacaactctatccgaacatcctcctcggaggccgtggtggaactaatcca
gggcaattgaaagtacatccaggtggtattgcttggagaaagcaaggtggtggaaagatc
atagagattgagaaagcagatattgctcgtgtcacttggatgaaagttcctagggcatac
caacttggcgttagacttaaagatggattgttttacaagttcattggatttcgggaacag
gacgtcagcaacttgacgaattatatacagaagaacattggtgtagcagcagaggagaag
caactctccaccagcggccataattggggagaaattgatataaatggaaacatgcttacg
tttttagttggttcaaagcaagcatttgaggtatctctagcagatgttgcacaaacccag
cttcaaggaaaaactgatgtctatatggagttccatgtggatgatactactggagcaaca
gagaaagattctctgatggatataagttttcatattcctacatcaaatacacagtttagt
ggtgatgaaaaccgccctccggctcaggttttcctagacaagattgtgtcactgactgat
gttggttcatctgaagaagctgttgtcacatttgagggaattgcaatcctcacccccaga
gggagatacagtgtggaactccatttctcattcttgcggcttcagggactggcgaatgat
tttaaaatccaatatagcagtgtagtcagacttttcctgttaccaaagtccaaccaacat
acctttgttataattacccttgatccaccaatcaggaaagggcaaacgttgtacccacat
atagtcattcagtttgaagcagataatgtagtggatagagacctggccttatctgaggaa
cttttgacaaccagatacaaggacaagttagaatcttcgtacaagggattaattcatgag
gttttcaccaaggtcttgcgtggtctatctggagccaaggtgaccaggccaggctctttc
cgaagttgtcaggatggatatgctgttaaatcatcacttaaagctgaagatggattactt
tatccacttgaaaaaggattcttctttctcccaaaacctccgacactcattcttcatgat
gagattgattttgttgaatttgagcggcatggtacaggtggttcaagtgtggcatcccac
tattttgatctccttgttaagcttaaaaatgatcaagaacatctcttcagaaatatccaa
aggaatgaatataatcacctcattgagtttattaaggcaaagggtatgaaaatattgaat
ctcacggatgctcaaacaaccaatggagttgcaactgctcttcaggatgatgatgatgct
gtagatccacatcttgaacggataaagaatgctgcgggtgatgaaagtgatgaagaggat
gaagattttgtggctgaaaaagatgatagtgggtctcctacagatgattctgggaatgag
gagtctgatgcaagtgaaagtgggggagaaaaaaaatcatccaccaaagagtcaaaaaaa
gaagctgctggtgtgaaggtaccatctgccaaggggaaaaccagggatgctgatgaagaa
agttcaaaaaagagaaaaccaaagaaaaagaaggatcctaatgcccccaaaagggcaatg
tctggttttatgtttttctcaaatgctgaaagagataatctaaagaagggcaatccagga
atgtcttttacagatgttggaagggcccttggtgagagatggaaaaaaatgattgctgaa
gagaaggaaccttatgagtcaatggccaaggctgatactaaacggtacagggaagcaatg
gctgactacaagagtagtgctcctatggacgtcgaccctggcgatgattctgattga
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