Zingiber officinale (ginger): 122001062
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Entry
122001062 CDS
T08725
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122001062
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122001062
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
122001062
NCBI-ProteinID:
XP_042411567
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Position
7A:16882819..16884575
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AA seq
415 aa
AA seq
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MGALVVVFFLALLSCNIPSSSSRTLPSKSTAAAAAAVEDPELVVQEVQRSLNVSRRELGY
LSCKTGNPIDDCWRCDPQWAKNRQRLADCAIGFGKNAIGGRDGDIYVVTDSGDDDPVDPK
PGTLRYAVIREEPLWIVFDHDMTITLKEELMMNSYKTLDGRGANVHIAGGPCITVQYVSN
VIIHGLHIHDCKQGGNAYVRDSPGHYGWRTLSDGDGVSIFGGAHVWVDHCTLSSCRDGLI
DAIHGSTAITISNNYFSNHDKVMLLGHSDELAADKSMQVTIAFNHFGEGLVQRMPRCRLG
YFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPDDRFSKEVTKREEATEGEWKKWNWR
SEGDLMLNGAFFTQSGAGASSSYSKASSLGARSSSVVDVITAAAGTLSCKKGSRC
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgggagcactcgtggtggtgttcttcctcgccttgttgtcctgcaacattcccagctct
tcttctcgtacattgccttcaaaatcaactgctgctgctgctgctgctgtcgaagaccct
gaattagtggtacaagaagtacaaaggagtttgaacgtgtcgcggcgggaattggggtac
ttgtcgtgcaagaccgggaacccgatcgacgactgctggcggtgcgacccgcagtgggcc
aagaaccggcagcggctggcggactgcgcgatcggattcgggaagaacgcgataggcggc
cgagacggtgacatctacgtggtgaccgacagcggcgacgacgacccggtggaccccaag
ccggggacgctgcggtacgcggtgatccgcgaggagccgctctggatcgtcttcgaccac
gacatgaccatcacgctcaaggaggagctgatgatgaactcgtacaagactctcgacggc
cgcggcgccaacgtgcacatagccggcgggccgtgcatcacggtgcagtacgtgagcaac
gtgatcatccacggactgcacatccacgactgcaagcagggcgggaacgcgtacgtgcgc
gactccccggggcactacgggtggcgcactctgtcggacggcgacggcgtgtccatcttc
ggcggcgcccacgtgtgggtcgaccactgcacgctgtcgagctgccgcgacggactgatc
gacgccatccacggctccaccgccatcaccatctccaacaactacttcagcaaccacgac
aaggtgatgctgctcggccacagcgacgagctcgccgccgacaagagcatgcaggtcacc
atcgccttcaaccacttcggggagggcctcgtgcagaggatgccaaggtgccgccttggc
tacttccacgtcgtgaacaacgattacacgcattgggagatgtacgccatcggggggagc
gcggcgccgaccattaacagccaaggaaacaggttccttgcgcccgacgaccgcttctcg
aaggaggtgaccaagcgcgaggaggcgacggagggcgagtggaagaagtggaattggagg
tcggaaggggatctgatgctgaacggagccttcttcacgcagtcaggcgcaggagcgtcg
tcgagctactcgaaagcgtcgagcttgggcgcacggtcgtcgtccgtggtcgacgttata
acggcggcggccggcacgctgtcatgcaagaaaggttcccgttgttga
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