Zingiber officinale (ginger): 122001112
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Entry
122001112 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122001112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122001112
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122001112
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
122001112
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
Motif
Other DBs
NCBI-GeneID:
122001112
NCBI-ProteinID:
XP_042411630
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Position
7A:complement(20112851..20117718)
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AA seq
315 aa
AA seq
DB search
MDSESIECVSSIDGMDQEETSVQHLHSSKTHGVAAPLPSAITPATSVHELLECPVCTNSM
YPPIHQCQNGHTLCSTCKTMVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYPLGCPE
IFPYYSKLKHEAQCNFRPYNCPYAGSECSVVGDIPFLVTHLRDDHKVDMHTGCTFNHRYV
KSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNFSYSLE
VGSNGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE
QQNNEAGVCMPNLSS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggattcggaaagcatcgaatgcgtgtcgtcgatcgacgggatggaccaagaggagacc
tccgttcaacaccttcactcctcgaagacccatggcgtcgctgctcctctcccttcggca
atcacccctgccaccagcgtccatgagcttctcgagtgtcccgtctgcacaaactctatg
tacccaccaatccatcagtgtcaaaatgggcacacactctgttcaacatgtaaaacaatg
gtgcacaaccgttgccctacttgtcgccaagagcttggggatatcaggtgtttggcactg
gaaaaggtggctgagtcacttgagcttccttgcaagtactatccacttggatgccctgaa
atcttcccttactatagcaagctgaaacatgaagctcagtgcaactttagaccatacaat
tgcccatatgcaggatctgaatgctctgtcgtcggagatatcccttttctggttacgcac
ttaagagatgatcacaaggtagacatgcatacgggatgcacattcaatcatcgatatgtt
aaatctaatcctcgagaagttgaaaatgccacatggatgttgactgtttttcactgcttc
ggtcagtatttctgcttacactttgaggccttccagcttgggatggctcctgtttacatg
gcatttctacgctttatgggggacgaaaacgaagccagaaactttagctacagcctcgag
gttgggagcaacggaaggaagctaatatgggaaggaactccccgaagcattcgcgacagt
caccgtaaggttcgtgacagtcacgatgggctcatcatacagaggaacatggcactcttt
ttctcgggaggcgacaggaaagagctgaagctgagggtgacaggcaggatctggaaggag
cagcagaacaatgaggccggtgtttgcatgccaaacctctctagctga
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