Zingiber officinale (ginger): 122001148
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Entry
122001148 CDS
T08725
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
122001148
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
122001148
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122001148
Prokaryotic type
122001148
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
122001148
NCBI-ProteinID:
XP_042411684
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All DBs
Position
7A:complement(22597748..22615324)
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AA seq
513 aa
AA seq
DB search
MAAAAAACSLRASFDPCILPSLTFRVLFCNLRSSRVLCSSILSLPSTTTCVDGSEIDGGG
GGGGKRWESFCKKKVVMRVGYIGTDYRGLQKQRDAHDLSTIEAELESAIYKSGGILDSNF
GKLQKIGWKRSSRTDKGVHSLATTISLKMEIPELAWKDDPSGIVLANYVNSNLPNNVKVF
SILPSQKSFDPRRECSLRMYSYLLPAEIIGIGGNCSSKEVTKHLEEFNSILKGFEGERPF
HNYTVRSKYRKPPSGKRNSMKQSRLKLDTLPSGVEESSGDVGNFHVEDATQSEHEERAIL
SCNTDEEEEVDESPDEKRNENKNSNLPPPVRARWLHEPDERDKLNASHFRKIFRCSCGDL
ETSSGRNHVVLSICGGSFMLHQIRKMVGTAVAVKRGLLPRDVIELSLAKFSRIVLPLAPS
EVLILRGNHYTTSNRPGNLTRPEVQLMAESQEIQAAADNFYQNVLLPQLSKFLDPLKSPW
KEWVENLEAFTSISDAELNDVRTAFHVWKEGFF
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggcctgttcgcttcgtgcatccttcgacccctgtatccttccc
agcctcaccttccgcgtccttttctgcaaccttagatcctctagagtgctttgctcctcc
attttgtcgcttccatctactacgacctgcgtggatggctccgaaatcgatggaggtggc
ggcggaggaggaaagaggtgggagtcattctgcaagaagaaggtcgtcatgcgagttgga
tacatcggaaccgattacagaggtcttcagaagcagcgggacgctcatgatttatcaact
attgaagctgaattggagtctgccatatacaagtcaggagggattcttgatagtaatttt
ggaaagttgcagaaaattggttggaaaaggagtagccgaactgacaaaggagttcattct
ttggccaccacaatttctctgaagatggaaatacctgaacttgcctggaaggatgatcct
agtggcattgtactcgctaattatgttaactctaacctgcccaataatgtgaaggttttc
agtattttaccttcccaaaaaagctttgatccaagacgggaatgtagtctccgtatgtac
tcctatcttcttcctgcagaaattattggcattggaggcaattgcagctccaaagaagtc
accaagcatttggaagagttcaacagtatactgaaaggttttgagggagagcgccctttc
cataactacacagttcgttccaaatataggaaaccaccttctggtaaaagaaactcgatg
aaacaatcaagactgaaactagatacattgccatcaggagttgaggaaagtagtggtgat
gttggaaatttccatgttgaagatgctacacaaagtgaacatgaagaacgggccattcta
tcatgtaacactgatgaggaggaggaagtagatgaatctccggatgaaaaaagaaacgaa
aataagaattccaatcttcctccacctgtacgtgcaagatggctccatgaaccggatgaa
agggacaaattaaatgcgtctcacttcagaaaaatttttagatgctcatgtggggatcta
gagacatcttctggaagaaaccatgtcgtgttgtcaatatgtggtggatctttcatgttg
catcagatccgcaaaatggttggaaccgcagtggcagtgaagcggggattgctacctaga
gatgtcatcgagctatctctggctaaattttctcgtatagttctaccacttgctccttca
gaagtattgatcttgaggggcaaccactatactactagcaatcggcctggaaatctaact
cggccagaggtgcaattaatggctgaatcacaggaaatccaggcagccgccgacaatttc
taccagaatgtgctattgcctcagctctccaagttcctcgatccattgaagtctccatgg
aaagaatgggtggaaaacttggaagcattcactagcatctcagatgcagaattgaatgat
gtcagaacagcatttcatgtgtggaaagaaggcttcttctaa
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