Zingiber officinale (ginger): 122001331
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Entry
122001331 CDS
T08725
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122001331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122001331
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122001331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
122001331
NCBI-ProteinID:
XP_042411954
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Position
7A:complement(37120695..37126203)
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AA seq
603 aa
AA seq
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MSLISQSVLLNERKGNKLDREVADAVVDDEVQEVDLIEEIKLKKSKKRSVKTDDFSQKKK
KKSKKSSIDMDVSLNEMAQEIEQEKMKRRQSKNASKEKAQKDAEEKMKSLESSLFGVIYN
PLEFGKEFNADGKKQVKADAPLFFMDKSTSNEMVVYEEELHAMAAEDTNKEERKPAWIDE
EEERTEVNIIRMNRLRKLRKEANEQVISGTDYISRLRAQHAKLNPGTEWANVDGKNAHES
DFDEDSYDESGVTIAHGYEDAEANDFLRSNDDLVIKSNTKLLPGLLEYSRMVNANAEVPS
NGPINSVQFHRNGQLLLTAGLDRRIRFFQVDGKRNPQIQSIFIEDCPVHKASFLPNGSEV
ILSGRRKFFYSIDLVKAAASKIGPLTGREEKSLEAFEVSPDSNTIAFIGNEGYILLVSSR
TKELIGTLKMNGSARCLAFADGGQQLLSGGGDGHVYHWDLRTRRCIHKGTDDGSIGGSAL
CASQDSSMFASGSASGIVNVYKREEFLGGKQKPLKTIENLTTMVDHMKFNHDSQILAMIS
RVSKNGLKLVHIPSYNVFSNYPPTRSSIQYPRCLDFSPGGGFMTVGNAAGKVFLYKLHHY
QNA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgagcttaatttcccaaagcgtgcttctgaatgaaaggaagggcaataaacttgataga
gaggtagctgatgcggttgtggatgatgaagttcaggaagttgatttgattgaggaaatt
aagttgaaaaaatcaaagaagagaagtgttaagactgatgatttttctcagaaaaagaag
aaaaaatcaaagaagagtagtatagatatggatgtttcacttaatgaaatggcacaagaa
attgaacaagagaaaatgaaaaggcggcagagtaagaatgcctcaaaggagaaggcacaa
aaagatgcagaagagaagatgaagagtcttgagagttctttgtttggtgtcatttataat
cctttggagtttgggaaggaattcaatgctgatggcaagaagcaggtcaaagcagatgcc
ccattgtttttcatggataagtccaccagcaatgagatggttgtgtatgaagaggaacta
catgctatggctgcagaagacaccaacaaagaagagagaaaacctgcatggatagatgag
gaggaggaaaggacagaggtcaatataattcgtatgaataggttgaggaagcttaggaag
gaggctaatgagcaagttatttctggtacagattacatttctcggttgagggctcaacat
gctaagctaaacccaggaacagagtgggcaaatgttgatggtaagaatgctcatgaaagt
gattttgatgaagactcttatgatgaaagtggtgtcactattgcccatggctacgaggat
gctgaagctaacgattttcttcgtagcaatgatgatcttgtcataaagagcaatactaaa
ctcttacctggattactggaatactcgaggatggtaaatgctaatgccgaggtgccctct
aatggtccaatcaattcagttcagtttcacagaaatggtcaattacttctgactgctgga
cttgataggcggataagatttttccaagtggatggaaagcgcaatcctcaaatacaaagt
atctttattgaggattgccctgttcataaggcatcctttttacccaatggttctgaggtt
atactttcaggcaggaggaaattcttttacagcattgatttggttaaagcagctgcgagt
aagataggtcccttgactgggagagaagagaaaagcttggaggcttttgaggtttctcct
gattcgaacaccattgcattcattggaaatgaaggttacatccttttggtttcatcccga
acaaaggagttaattgggactttgaagatgaatggaagtgctcgatgtctggcttttgct
gacggtgggcagcagctattgagcggtggaggtgatggacatgtctatcactgggatctc
agaactaggaggtgcattcacaagggcactgacgatggtagcataggtgggtcagccctc
tgtgcttcacaagatagttctatgtttgcttcaggttcagccagtggtattgttaatgtt
tacaagagagaggagtttcttgggggaaagcaaaagccattgaagactattgaaaattta
acaacaatggttgatcatatgaagttcaaccatgacagtcagattttggctatgatctcg
agagtgagtaagaatggtctaaagctggtgcatatcccatcgtacaatgtattctcaaac
tatcctcctacgagatctagcatccagtatcctcgctgtcttgatttcagccctggaggt
ggatttatgacagtaggaaatgctgctggaaaggtttttctctacaagttgcaccattac
caaaatgcatga
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