Zingiber officinale (ginger): 122001399
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Entry
122001399 CDS
T08725
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122001399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122001399
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122001399
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GFIT
Motif
Pfam:
DUF7885
F-box-like
LRR_6
F-box
LRR_4
F-box_4
Motif
Other DBs
NCBI-GeneID:
122001399
NCBI-ProteinID:
XP_042412046
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Position
7A:complement(51321145..51327244)
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AA seq
368 aa
AA seq
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MVGGRPLTGHLDIWFKHLIVSGGGRKIEKAEDMMVGWKDLPMELLLRILSLLDDQTVIVA
SGVCTSWREALCLGLTKLSLSWCKYHMNSLVQSLAPKFVKLQVLSLRQNHRSQLEDGSVE
IIAGYCHDLRDLDLSKSLKLSDSSLFLLAHGCSRLTKLNISGCEGFSDSALAYLATHCKN
MKTLNLCGCVRAATDRALQAISCNCSKLQYLNLGWCERVSDAGVTSLAAGCHDIKALNLC
GCVQITDESVIALANGCLHLGSLGLYYCKNITDRAMYSLANSRLKRKRGLWQDSSREQGG
LVNLNISQCTALTAVAVQAVCDSFPGLHTCLGRNSLIISGCLNLTSVHCYCAIQTHQASN
IVSADHAY
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggttggtgggaggcctttaacgggacacttggacatttggttcaagcacctcattgtg
tctggtggtggaaggaagatagagaaggcggaagatatgatggtggggtggaaggatctt
ccgatggagcttttactgcgaatactgtctctcttggatgatcaaacggtgattgtggct
tcaggtgtttgtactagctggagagaagctttgtgcttggggctcacaaagctttctcta
tcatggtgcaagtatcacatgaacagtcttgtgcagtcacttgcccccaagtttgtcaag
ctgcaggttttgtctcttagacaaaatcatagatctcagctagaggatggttctgtggag
attattgctggttactgccatgatttgcgggatttggaccttagcaaaagcctcaagctg
agtgacagttctttgtttcttttggctcatggatgctctcgcctgacgaaactcaatatc
agtggatgtgaaggttttagtgattctgctcttgcataccttgctactcactgtaaaaac
atgaaaaccttgaatctttgtggatgtgtgagggctgcaactgacagagctctacaggct
atctcatgcaattgcagtaaactacaatatttaaacttgggctggtgtgagcgtgttagc
gatgctggagttaccagtttggcagcaggctgtcatgatattaaggctttgaacttgtgt
ggttgtgtacaaataacagatgagagtgtgattgcattagcaaatggctgtcttcatcta
ggatctctgggtttgtattactgcaagaacatcacagacagagccatgtactcacttgca
aacagccgcttgaagaggaagcgggggctgtggcaagacagcagtcgcgaacaaggtggg
ctagtgaatctgaacatcagccagtgcacagccttgacagcggttgcggttcaggcagtt
tgtgactcgttcccaggactacatacctgcctggggaggaattccctcatcataagtggc
tgcctaaacctcacttccgtgcattgctattgtgctattcaaactcatcaggccagtaac
atagtctctgcagaccatgcttactag
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