Zingiber officinale (ginger): 122001552
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Entry
122001552 CDS
T08725
Name
(RefSeq) transcription initiation factor IIE subunit alpha-like isoform X1
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122001552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122001552
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
122001552
Prokaryotic type
Archaeal type
TFE
122001552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Zn_ribbon_8
Zn_Ribbon_TF
Cas12f1-like_TNB
HVO_2753_ZBP
zf-HYPF
Zn_ribbon_IS1595
Zn_ribbon_SprT
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
122001552
NCBI-ProteinID:
XP_042412285
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Position
7A:complement(75381414..75387864)
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AA seq
472 aa
AA seq
DB search
MSMEPFNRMVKLAARAFYDDVSIMGESQSKPGRIDNRGMTVIVLDALTRRQWVREEDLAK
ALKLHSKQLRRTLRFFEEEKLITRVHRKESAKGAKNFNAAIAATRDTQQTTKEGEEKMKM
HMHSYCCLDYAQILDVVRYRMHRMKKKLKDELDSRNTIQEYICPNCGRRYSAFDALQLVS
MEDEYFHCENCNGELVAESEKLAAEQLGDGDDNARKRRHEKLKDMYQKMEDQLKPLIAQL
DRVKDLPAPEFGTLQAWEARARAASQANGDSNASDSKNIQGQGYGGTPMPFLGETSIEVA
LSGVEAKEETEPDIKPTALKVIPPWMIKQGMNLTIEQRRGIMPEPNVEHNSDDKKSSVDD
KKPSADRDNEKSLQDEYLKAYYAALVKRQEEEEASRRIQQQTELSTSAAEEPVDRRVGMK
SKREDDEDIEWESAAGTGNSSQSYKLADLNAEADASDDDNGGDDDDIAWEEG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggaacccttcaacaggatggttaagctcgctgcgcgtgctttctatgatgat
gtatccattatgggcgaaagccagtctaagcctgggaggatcgacaacagggggatgact
gtgattgttcttgatgctctaactaggcgtcaatgggtccgtgaagaagatttggctaaa
gccttgaaattgcattccaagcaactgcgccgtactttacggttttttgaagaagagaag
ctgattactagagtacatcgaaaagagagtgctaaaggtgcaaaaaattttaatgctgca
attgctgctactcgtgatactcaacaaactactaaagagggagaggagaagatgaaaatg
catatgcattcatactgctgtttagattatgcacagattcttgatgttgttagataccga
atgcatcgaatgaaaaagaaattaaaggatgaattggacagcagaaataccattcaggag
tacatttgccctaactgtggaagaaggtattctgcttttgatgcactacaacttgtgagt
atggaagacgagtattttcactgtgaaaattgcaatggtgaacttgttgctgagagcgag
aagctggctgctgagcaacttggtgatggggatgataatgctaggaagaggaggcatgaa
aagttaaaagacatgtatcagaaaatggaggatcagctcaagcctttaatagcgcagctt
gatagggtgaaagatttgcctgctcctgagtttggaacattgcaagcatgggaagcaaga
gcacgagctgcatctcaagctaacggcgattctaatgctagtgattcaaaaaatatccag
gggcaaggttacggtggcacaccaatgccattccttggcgagacaagtattgaagttgct
ttatctggtgttgaggccaaggaagaaaccgagcctgatataaaacccacagcattgaaa
gttatacctccctggatgatcaaacaaggaatgaatcttacaatagagcaacgcagaggg
attatgcctgaacccaatgttgagcacaattctgatgacaagaagtcaagtgtggatgac
aagaaaccaagtgcagatcgagacaatgagaagagtttacaggatgaatatctgaaggca
tattatgctgctttagtgaagaggcaagaagaagaagaggcctctagaagaattcaacaa
caaacagaactttcgacaagtgctgctgaagaacctgttgatcgacgtgttggcatgaaa
tcaaaacgcgaagatgatgaggatattgaatgggagagtgcagctggtactggcaattca
agccagtcttacaagcttgccgatttgaatgccgaagctgatgcgtctgacgacgacaat
ggtggcgatgacgacgacatcgcctgggaggaaggttaa
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